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Filtering by: Alternative title ssim EC 419 Remove constraint Alternative title ssim: EC 419 Committee Member Chang, Jeff Remove constraint Committee Member: Chang, Jeff

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Genome-enabled investigation of the minimal growth requirements andphosphate metabolism for Pelagibacter marine bacteria

Creator:

Carini, Paul J.

Abstract:

Members of the SAR11 clade of heterotrophic α-proteobacteria are ubiquitous and abundant in the world's oceans where they are thought to play a pivotal role in the global carbon cycle. The first SAR11 bacterium cultivated in vitro, 'Candidatus Pelagibacter ubique' HTCC1062 (Ca. P. ubique), was isolated by dilution into sterile...

Resource Type:

Dissertation
Cooperation and conflict in Pseudomonas aeruginosa quorum sensing

Creator:

Wilder, Cara N.

Abstract:

Pseudomonas aeruginosa is an environmental bacterium as well as an opportunistic pathogen that primarily infects immunocompromised individuals, including those suffering from cystic fibrosis. The density-dependent regulation of gene expression via cell-to-cell communication, also termed quorum sensing (QS), is an important virulence determinant in this organism. Generally, P. aeruginosa uses three...

Resource Type:

Dissertation
The proteomic and transcriptomic responses to iron, sulfur, and nitrogen limitation in the abundant marine bacterium Candidatus Pelagibacter ubique

Creator:

Smith, Daniel P.

Abstract:

Batch cultures of Candidatus Pelagibacter ubique were grown under iron-, organosulfur-, and nitrogen-limiting conditions to understand how this ubiquitous marine bacterium responds to and interacts with environments where growth is limited by the availability of these nutrients. Global gene expression was monitored using microarrays and quantitative mass spectrometry to observe...

Resource Type:

Dissertation
Transcriptomic analysis using high-throughput sequencing and DNA microarrays

Creator:

Fox, Samuel E.

Abstract:

Transcriptomics and gene expression profiling enables the elucidation of the genetic response of an organism to various environmental cues. Transcriptomics enables the deciphering of differences between two closely related organisms to the same environment and in contrast, enables the elucidation of genetic responses of the same organism to different environmental...

Resource Type:

Dissertation

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Academic Affiliation

Microbiology2

Advisor

Giovannoni, Stephen J.2
Mockler, Todd1
Schuster, Martin1

Commencement Year

Commencement Year range begin – Commencement Year range end

Current results range from 2011 to 2014

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Committee Member

Chang, Jeff[remove]4
Denver, Dee2
Milligan, Allen2
Freitag, Michael1
Gitali, Indru1
more Committee Members »

Creator

Carini, Paul J.1
Fox, Samuel E.1
Smith, Daniel P.1
Wilder, Cara N.1

Date

Date range begin – Date range end

Current results range from 2011 to 2013

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Decade

2010-20194

Degree Field

Microbiology2
Molecular and Cellular Biology2

Degree Level

Doctoral4

Degree Name

Doctor of Philosophy (Ph.D.)4

Language

English [eng]4

License

All rights reserved4

Non-Academic Affiliation

Oregon State University. Graduate School4

Peer Reviewed

No4

Resource Type

Dissertation4

Rights Statement

In Copyright4

Subject

Marine bacteria2
Microbial metabolism2
Artificial seawater1
Brachypodium -- Genetics1
Fishery resources -- Hatchery vs. wild stocks1
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