The European green crab (Carcinus maenas) has a six-year life span and has persisted at low densities in Oregon and Washington coastal estuaries since the late 1990’s. After the arrival of a strong year class in 1998, significant recruitment to the Oregon and Washington populations occurred only in 2003, 2005,...
The quality of macromolecular crystal structures depends, in part, on the quality and quantity of the data used to produce them. Here, we review recent shifts in our understanding of how to use data quality indicators to select a high resolution cutoff that leads to the best model, and of...
During explosive movements and potentially injurious situations the ability to rapidly generate torque is critical. Previous research has suggested different phases of rate of torque development (RTD) are differentiately controlled. However, the extent to which supraspinal and spinal mechanisms predict RTD at different time intervals is unknown. RTD of the...
Farmers typically use three applications of glyphosate to control weeds in no-till fallow. Some are now experimenting with an unconventional modification to this widely used approach. This modified approach is based on an intentional delay in the time of the first spraying. Farmers delay their first spraying because they want...
Dynamic bipedal robots, which are capable of versatile behaviour, are rare. Most bipedal robots are either versatile and static or dynamic and limited to specific gaits. Over the last twenty years the bio-inspired spring mass model became a versatile template for bipedal walking and running gaits with many studies motivated...
In this paper, the methodology of the directed relation graph with error propagation and sensitivity analysis (DRGEPSA), proposed by Niemeyer et al. [Combustion and Flame 157 2010) 1760–1770], and its differences to the original directed relation graph method are described. Using DRGEPSA, the detailed mechanism of ethylene containing 71 species...
Objectives:
To compare the immediate postcounseling retention of important information using the traditional method with retention obtained using the Indian Health Service (IHS) interactive technique, and to compare the time required to counsel patients on new prescriptions using the traditional method with the time required using the IHS technique.
Design:...
Understanding the genetic basis of pathogen susceptibility in various crop plants is crucial to increasing the stability of food, feed, and fuel production. Varietal differences in defence responses provide insights into the mechanisms of resistance and are a key resource for plant breeders. To explore the role of salicylic acid...
Two myxozoan species were observed in the kidney of topsmelt, Atherinops affinis, during a survey of parasites of estuarine fishes in the Carpinteria Salt Marsh Reserve, California. Fish collected on 3 dates in 2012 and 2013 were sectioned and examined histologically. Large extrasporogonic stages occurred in the renal interstitium of...
Flower number is the primary determinant of yield in pyrethrum (Tanacetum cineariifolium). Traditional estimates of flower numbers use physical harvesting of flowers, which is time consuming, destructive, and complicated. The precision of flower number estimates may be highly influenced by spatial heterogeneity of plant density and vigor. Here, we examined...
Freeze-drying, or lyophilization, has shown great promise in addressing many of the logistical challenges of storing and preserving red blood cells (RBCs). A crucial part of any RBC lyophilization protocol is the primary drying temperature, which affects the sample drying rate and the dried cake’s ability to form a stable...
Air pollution epidemiological studies suggest that elevated exposure to fine particulate matter (PM₂.₅) is associated with higher prevalence of term low birth weight (TLBW). Previous studies have generally assumed the exposure–response of PM₂.₅ on TLBW to be the same throughout a large geographical area. Health effects related to PM₂.₅ exposures,...
We provide the first evidence on the causal effect of border enforcement on the full spatial distribution of Mexican immigrants to the United States. We address the endogeneity of border enforcement with an instrumental variables strategy based on administrative delays in budgetary allocations for border security. We find that 1,000...
DHA (22:6,ω3), but not EPA (20:5,ω3), attenuates Western diet (WD)-induced hepatic fibrosis in a Ldlr[superscript −/−] mouse model of nonalcoholic steatohepatitis. We examined the molecular basis for the differential effect of dietary EPA and DHA on WD-induced hepatic fibrosis. DHA was more effective than EPA at preventing WD-induced effects on...
Gammaherpesviruses (GHVs) have been identified in many species and are often associated with disease. Recently, we characterized three novel felid GHVs in domestic cats, bobcats, and pumas. In this study we sought to determine whether free ranging ocelots (Leopardus pardalis) and bobcats (Lynx rufus) are infected with additional GHVs. We...
Critical to the development of predictive combustion models is a robust understanding of the coupled effects of chemical kinetics and convective-diffusive transport at both atmospheric and elevated pressures. The present study describes a new variable-pressure non-premixed counterflow ignition experiment designed to address the need for well-characterized reference data to validate...
This study estimates a supply of juniper from private lands to determine how much of the available juniper (Juniperus occidentalis Hook) can be economically supplied at alternative prices if a market was to develop for using juniper as a biomass source. While juniper is native to central Oregon, current land...
Given an affine variety X, a morphism ϕ:X→X, a point α∈X, and a Zariski-closed subset V of X, we show that the forward ϕ-orbit of α meets V in at most finitely many infinite arithmetic progressions, and the remaining points lie in a set of Banach density zero. This may...
Here we present a phylogeny of beetles (Insecta: Coleoptera) based on DNA sequence data from eight nuclear genes, including six single-copy nuclear protein-coding genes, for 367 species representing 172 of 183 extant families. Our results refine existing knowledge of relationships among major groups of beetles. Strepsiptera was confirmed as sister...
Finite element calculations were used to bound the modulus of aligned, short-fiber composites with randomly arranged fibers, including high fiber to matrix modulus ratios and high fiber aspect ratios. The bounds were narrow for low modulus ratio, but far apart for high ratio. These numerical experiments were used to evaluate...
Global plant genetics research efforts have focused on developing high yielding, stress tolerant, and disease resistant row and field crop varieties that are more efficient in their use of agronomic inputs (water, nutrients, pesticides, etc.). Until recently, a key bottleneck in such research was the lack of high-throughput sensing technologies...
Fishery management production models tend to stress only the elements directly linked to fish (i.e. fish, fish food, and fish predators). Large coastal jellyfish are major consumers of plankton in heavily fished ecosystems; yet, they are frequently not included as model components. We explore the relationship between gulf menhaden (Brevoortia...
Long-period global-scale electromagnetic induction studies of deep Earth conductivity are based almost exclusively on magnetovariational methods and require accurate models of external source spatial structure. We describe approaches to inverting for both the external sources and three-dimensional (3-D) conductivity variations and apply these methods to long-period (T≥1.2 days) geomagnetic observatory...
Polycyclic aromatic hydrocarbons (PAHs) are priority environmental contaminants that exhibit mutagenic, carcinogenic, proinflammatory, and teratogenic properties. Oxygen-substituted PAHs (OPAHs) are formed during combustion processes and via phototoxidation and biological degradation of parent (unsubstituted) PAHs. Despite their prevalence both in contaminated industrial sites and in urban air, OPAH mechanisms of action...
The diverse predatory rockfishes (Sebastes spp.) support extensive commercial fisheries in the northeastern Pacific. Although 106 species of Sebastes are considered valid, many of the ecological, geographical, and morphological boundaries separating them lack clarity. We clarify one such boundary by separating the blue rockfish Sebastes mystinus (Jordan and Gilbert, 1881)...
Among early adolescents (10-14 years), poor diet quality along with physical inactivity can contribute to an increased risk of obesity and associated biomarkers for chronic disease. Approximately one-third of United States (USA) children in this age group are overweight or obese. Therefore, attention to factors affecting dietary intake as one...
Podosphaera macularis, the causal agent of hop powdery mildew, is known to produce chasmothecia (formerly cleistothecia) in eastern North America and Europe. Ascocarps have not yet been reported from the Pacific Northwestern region of North America. Reasons for the apparent absence of chasmothecia in the Pacific Northwest were unknown. This...
We present a systems modeling approach to the development of a place-based ecohydrological model. The conceptual model is calibrated to a variety of existing observations, taken in watershed 10 (WS10) at the HJ Andrews Experimental Forest (HJA) in Oregon, USA, a long term ecological research (LTER) site with a long...
Despite its importance to biodiversity and ecosystem function, patterns and drivers of regional scale variation in forest structure and development are poorly understood. We characterize structural variation, create a hierarchical classification of forest structure, and develop an empirically based framework for conceptualizing structural development from 11,091 plots across 25 million...
While sophisticated tools are used to monitor behavioral changes of large marine vertebrates, determining whether these changes are meaningful for management and conservation is challenging. The Population Consequences of Disturbance model proposed a bioenergetics model to detect biologically meaningful population responses, where disturbance costs are linked to lost energy. The...
To predict future coastal hazards, it is important to quantify any links between climate drivers and spatial patterns of coastal change. However, most studies of future coastal vulnerability do not account for the dynamic components of coastal water levels during storms, notably wave-driven processes, storm surges and seasonal water level...
Intrinsic and extrinsic factors affect vital rates and population-level processes, and understanding these factors is paramount to devising successful management plans for wildlife species. For example, birds time migration in response, in part, to local and broadscale climate fluctuations to initiate breeding upon arrival to nesting territories, and prolonged inclement...
Homozygous familial hypercholesterolemia (HoFH) is a rare, genetic disorder characterized by an absence or impairment of low-density lipoprotein receptor (LDLR) function resulting in significantly elevated low-density lipoprotein cholesterol (LDL-C) levels. The cholesterol exposure burden beginning in utero greatly increases the risk for atherosclerotic cardiovascular disease (ASCVD) and premature death. The...
Contributing to the worldwide biodiversity crisis are emerging infectious diseases, which can lead to extirpations and extinctions of hosts. For example, the infectious fungal pathogen Batrachochytrium dendrobatidis (Bd) is associated with worldwide amphibian population declines and extinctions. Sensitivity to Bd varies with species, season, and life stage. However, there is...
Oceanic density overturns are commonly used to parameterize the dissipation rate of turbulent kinetic energy. This method assumes a linear scaling between the Thorpe length scale L[subscript]T and the Ozmidov length scale L[subscript]O. Historic evidence supporting L[subscript]T ~ L[subscript]O has been shown for relatively weak shear-driven turbulence of the thermocline;...
The genus Phytophthora contains some of the most notorious plant pathogens affecting nursery crops. Given the recent emergence of the sudden oak death pathogen Phytophthora ramorum, particularly in association with Rhododendron spp., characterization of Phytophthora communities associated with this host in nursery environments is prudent. Many taxa may present symptoms...
The fatigue crack growth rates for nickel-based superalloy Haynes 282 were measured at 550, 650, and 750 °C using compact tension specimens with a load ratio of 0.1 and cyclic loading frequencies of 25 and 0.25 Hz. The crack path was observed to be primarily transgranular for all temperatures, and...
Basaltic volcanism provides a window into the Earth’s mantle. Seeing through this window requires seeing through the processes of magma genesis and evolution that distort the view. Radiogenic isotope ratios, and to a lesser extent incompatible elements and stable isotope ratios, allow us to see through these distortions and infer...
In Kentucky bluegrass (Poa pratensis), Claviceps purpurea, the causal agent of ergot, typically releases ascospores during the early-morning hours, between about midnight and 10:00 A.M., corresponding to time of flowering, when the unfertilized ovaries are most susceptible to infection. During aeromycology studies of C. purpurea in perennial ryegrass (Lolium perenne)...
Barley (Hordeum vulgare L.) possesses a large and highly repetitive genome of 5.1 Gb that has hindered the development of a complete sequence. In 2012, the International Barley Sequencing Consortium released a resource integrating whole-genome shotgun sequences with a physical and genetic framework. However, because only 6278 bacterial artificial chromosome...
Intrinsic and extrinsic factors affect vital rates and population-level processes, and understanding these factors is paramount to devising successful management plans for wildlife species. For example, birds time migration in response, in part, to local and broadscale climate fluctuations to initiate breeding upon arrival to nesting territories, and prolonged inclement...
Semidiurnal velocity and density oscillations are examined over the mid- and inner continental shelf near Heceta Bank on the Oregon coast. Measurements from two long-term observation networks with sites on and off the submarine bank reveal that both baroclinic velocities and displacements are dominated by the first mode, with larger...
Considerable uncertainties often surround the causes of long-term changes in population abundance. One striking example is the precipitous decline of southern sea lions (SSL; Otaria flavescens) at the Falkland Islands, from 80 555 pups in the mid 1930s to just 5506 pups in 1965. Despite an increase in SSL abundance over...
The diurnal variability and the environmental conditions that support the moisture resurgence of MJO events observed during the Cooperative Indian Ocean Experiment on Intraseasonal Variability (CINDY)/DYNAMO campaign in October–December 2011 are investigated using in situ observations and the cloud-resolving fully air–ocean–wave Coupled Ocean–Atmosphere Mesoscale Prediction System (COAMPS). Spectral density and...
Two methods of computing the time-mean divergence and vorticity from satellite vector winds in rain-free (RF) and all-weather (AW) conditions are investigated. Consequences of removing rain-contaminated winds on the mean divergence and vorticity depend strongly on the order in which the time-average and spatial derivative operations are applied. Taking derivatives...
Simulations from a regional climate model (RCM) as part of a superensemble experiment were compared with observations of surface meteorological variables over the western United States. The RCM is the Hadley Centre Regional Climate Model, version 3, with improved physics parameterizations (HadRM3P) run at 25-km resolution and nested within the...
The neotropical biogeographic zone is a ‘hot spot’ of global biodiversity, especially for insects. Fungal pathogens of insects appear to track this diversity. However, the integration of this unique component of fungal diversity into molecular phylogenetic analyses remains sparse. The entomopathogenic fungal genus Ophiocordyceps is species rich in this region...
Ecological restoration programs often attempt to maintain or enhance ecosystem services (ES), but fine-scale maps of multiple ES are rarely available to support prioritization among potential projects. Here we use agency reports, citizen science, and social media as data sources to quantify the spatial distribution of five recreational elements of...
Mechanical pulp fibers (MPFs) and chemical pulp fibers (CPFs) from moso bamboo have been characterized in terms of their length and width distributions, and their reinforcing effects in unsaturated polyester (UPE) composites have also been investigated. CPF-UPE composites had much higher tensile strength, flexural strength, and flexural modulus than MPF-UPE...
The use of duplex stainless steels (DSS) in nuclear power generation systems is limited by thermal instability that leads to embrittlement in the temperature range of 204°C to 538°C. New lean-grade alloys, such as 2101, offer the potential to mitigate these effects. Thermal embrittlement was quantified through impact toughness and...
Inherited bone marrow failure syndromes (IBMFS) including Fanconi anemia, dyskeratosis congenita, Diamond-Blackfan anemia, and Shwachman-Diamond syndrome are rare genetic disorders characterized by hematologic complications and increased risk of cancer. Patients and their families likely experience obstacles in obtaining sufficient health information given their disorders’ rarity. To investigate this possibility, we...
The Global Earthquake Model (GEM) aims to develop uniform, openly available, standards, datasets and tools for worldwide seismic risk assessment through global collaboration, transparent communication and adapting state-of-the-art science. GEM Faulted Earth (GFE) is one of GEM’s global hazard module projects. This paper describes GFE’s development of a modern neotectonic...
Aim: The ecological effects of biological invasions are well documented, but little is known about the effects of invaders on the genetic structure of native species. We examined the phylogeography, genetic variation and population structuring of two galaxiid fishes, Aplochiton zebra and A. taeniatus, threatened by non-native salmonids, and whose...
Questions: Mountain systems have high abiotic heterogeneity over local spatial scales, offering natural experiments for examining plant species invasions. We ask whether functional groupings explain non-native species spread into native vegetation and up elevation gradients.We examine whether non-native species distribution patterns are related to environmental variables after controlling for elevation...
Adequate energy stores are essential for survival, and sophisticated neuroendocrine mechanisms evolved to stimulate foraging in response to nutrient deprivation. Food search behavior is usually investigated in young animals, and it is not known how aging alters this behavior. To address this question in Drosophila melanogaster, we compared the ability...
Low-temperature combustion (LTC) engine concepts such as homogeneous charge compression ignition (HCCI) offer the potential of improved efficiency and reduced emissions of NOₓ and particulates. However, engines can only successfully operate in HCCI mode for limited operating ranges that vary depending on the fuel composition. Unfortunately, traditional ratings such as...
This research focuses on biochemical changes related to quality losses observed in Atlantic mackerel (Scomber scombrus) muscle stored under commercial frozen storage conditions (9 months, -18 ºC) when subjected to high-hydrostatic pressure (HHP) treatments (125, 150, 175 and 200 MPa for 0 min) before freezing. After freezing, free fatty acid...