Index Catalog // ScholarsArchive@OSU

Identification of Cervical Cancer Key Regulators using Network Biology Approach - Supplementary tables

Creator:: Vyshenska, Dariia and Morgun, Andrey
Abstract:: This data contains large supplementary tables for the PhD dissertation of Dariia Vyshenska. Title of the Dissertation: "Identification of Cervical Cancer Key Regulators using Network Biology Approach" The dataset contains data from two types of research. Research #1: Identification of bacterial regulators of cervical cancer gene expression. It contains microbial...
Resource Type:: Dataset

Predicting Hydrologic Function With Aquatic Gene Fragments

Creator:: Good, S. P., URycki, D. R., and Crump, B. C.
Abstract:: Recent advances in microbiology techniques, such as genetic sequencing, allow for rapid and cost-effective collection of large quantities of genetic information carried within water samples. Here we posit that the unique composition of aquatic DNA material within a water sample contains relevant information about hydrologic function at multiple temporal scales....
Resource Type:: Article
Full Text:: . P., URycki, D. R., & Crump, B. C. (2018). Predicting hydrologic function with aquatic gene fragments

Gene expression correlated with delay in shell formation in larval Pacific oysters (Crassostrea gigas) exposed to experimental ocean acidification provides insights into shell formation mechanisms

Creator:: Ventura, Alexander, Durland, Evan, De Wit, Pierre, and Langdon, Chris J.
Abstract:: Background: Despite recent work to characterize gene expression changes associated with larval development in oysters, the mechanism by which the larval shell is first formed is still largely unknown. In Crassostrea gigas, this shell forms within the first 24 h post fertilization, and it has been demonstrated that changes in...
Resource Type:: Article
Full Text:: Gene expression correlated with

Muscle Segment Homeobox Genes Direct Embryonic Diapause by Limiting Inflammation in the Uterus

Creator:: Cha, Jeeyeon, Burnum-Johnson, Kristin E., Bartos, Amanda, Li, Yingju, Baker, Erin S., Tilton, Susan C., Webb-Robertson, Bobbie-Jo M., Piehowski, Paul D., Monroe, Matthew E., Jegga, Anil G., Murata, Shigeo, Hirota, Yasushi, and Dey, Sudhansu K.
Abstract:: Embryonic diapause is a reproductive strategy widespread in the animal kingdom. This phenomenon is defined by a temporary arrest in blastocyst growth and metabolic activity within a quiescent uterus without implantation until the environmental and maternal milieu become favorable for pregnancy to progress. We found that uterine Msx expression persists...
Resource Type:: Article

Histopathologic Alterations Associated with Global Gene Expression Due to Chronic Dietary TCDD Exposure in Juvenile Zebrafish

Creator:: Liu, Qing, Spitsbergen, Jan M., Cariou, Ronan, Huang, Chun-Yuan, Jiang, Nan, Goetz, Giles, Hutz, Reinhold J., Tonellato, Peter J., and Carvan, Michael J., III
Abstract:: Correction 25 Aug 2014: The PLOS ONE Staff (2014) Correction: Histopathologic Alterations Associated with Global Gene Expression Due to Chronic Dietary TCDD Exposure in Juvenile Zebrafish. PLOS ONE 9(8): e106605. https://doi.org/10.1371/journal.pone.0106605
Resource Type:: Article

Identification and characterization of capa and pyrokinin genes in the brown marmorated stink bug, Halyomorpha halys (Hemiptera): Gene structure, immunocytochemistry, and differential expression

Creator:: Ahn, Seung-Joon and Choi, Man-Yeon
Abstract:: CAPA and pyrokinin (PK) neuropeptides are produced from two different genes, capa and pyrokinin, respectively. In this study, we identified and characterized the capa and pyrokinin genes from the brown marmorated stink bug, Halyomorpha halys (Hemiptera). The capa gene encodes two CAPA-PVK (periviscerokinin) peptides (DAGLFPFPRVamide and EQ-LIPFPRVamide) and one CAPA-DH...
Resource Type:: Article
Full Text:: papatasi (Choi et al., 2015). The D. melanogaster PK1 (=CAPA‐3) is produced by the capa gene instead of

Expansion and Divergence of Argonaute Genes in the Oomycete Genus Phytophthora

Creator:: Bollmann, Stephanie R., Press, Caroline M., Tyler, Brett M., and Grunwald, Niklaus J.
Abstract:: Modulation of gene expression through RNA interference is well conserved in eukaryotes and is involved in many cellular processes. In the oomycete Phytophthora, research on the small RNA machinery and function has started to reveal potential roles in the pathogen, but much is still unknown. We examined Argonaute (AGO) homologs...
Resource Type:: Article
Full Text:: University, Corvallis, OR, United States Modulation of gene expression through RNA interference is well

Transkingdom network reveals bacterial players associated with cervical cancer gene expression program

Creator:: Lam, Khiem Chi, Vyshenska, Dariia, Hu, Jialu, Rodrigues, Richard Rosario, Nilsen, Anja, Zielke, Ryszard A., Brown, Nicholas Samuel, Aarnes, Eva-Katrine, Sikora, Aleksandra E., Shulzhenko, Natalia, Lyng, Heidi, and Morgun, Andrey
Abstract:: Cervical cancer is the fourth most common cancer in women worldwide with human papillomavirus (HPV) being the main cause the disease. Chromosomal amplifications have been identified as a source of upregulation for cervical cancer driver genes but cannot fully explain increased expression of immune genes in invasive carcinoma. Insight into...
Resource Type:: Article
Full Text:: with cervical cancer gene expression program Transkingdom network reveals bacterial players

Hyperdiverse Gene Cluster in Snail Host Conveys Resistance to Human Schistosome Parasites

Creator:: Tennessen, Jacob A., Théron, André, Marine, Melanie, Yeh, Jan-Ying, Rognon, Anne, and Blouin, Michael S.
Abstract:: Schistosomiasis, a neglected global pandemic, may be curtailed by blocking transmission of the parasite via its intermediate hosts, aquatic snails. Elucidating the genetic basis of snail-schistosome interaction is a key to this strategy. Here we map a natural parasite-resistance polymorphism from a Caribbean population of the snail Biomphalaria glabrata. In...
Resource Type:: Article
Full Text:: Hyperdiverse Gene Cluster in Snail Host Conveys

Identification of Pseudomonas syringae genes required for perception of host-derived virulence-inducing metabolites

Creator:: Turner, Sydney E.
Abstract:: Pseudomonas syringae is a Gram-negative bacterium that can infect a variety of important crops. Infection by P. syringae is dependent on a type III secretion system (T3SS) that delivers effector proteins to plant cells to suppress host defenses. Previous work has shown that, in the presence of simple sugars, specific...
Resource Type:: Honors College Thesis
Full Text:: characterized one screen-identified gene, setA, and demonstrated that it is required for avrRpm1 expression in

ScholarsArchive@OSU

Identification of Cervical Cancer Key Regulators using Network Biology Approach - Supplementary tables

Predicting Hydrologic Function With Aquatic Gene Fragments

Gene expression correlated with delay in shell formation in larval Pacific oysters (Crassostrea gigas) exposed to experimental ocean acidification provides insights into shell formation mechanisms

Muscle Segment Homeobox Genes Direct Embryonic Diapause by Limiting Inflammation in the Uterus

Histopathologic Alterations Associated with Global Gene Expression Due to Chronic Dietary TCDD Exposure in Juvenile Zebrafish

Identification and characterization of capa and pyrokinin genes in the brown marmorated stink bug, Halyomorpha halys (Hemiptera): Gene structure, immunocytochemistry, and differential expression

Expansion and Divergence of Argonaute Genes in the Oomycete Genus Phytophthora

Transkingdom network reveals bacterial players associated with cervical cancer gene expression program

Hyperdiverse Gene Cluster in Snail Host Conveys Resistance to Human Schistosome Parasites

Identification of Pseudomonas syringae genes required for perception of host-derived virulence-inducing metabolites

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