Index Catalog // ScholarsArchive@OSU

Fish Schooling Data Subset

Creator:: Katz, Yael, Tunstrøm, Kolbjørn, Ioannou, Christos C., Huepe, Cristián, and Couzin, Iain D.
Abstract:: The data is a JSON format file containing the position, velocity, and fish identifier data for 300 golden shiners in a shallow (depth of 4.5 to 5 cm) rectangular water tank (2.1 by 1.2 meters). There are 5000 individual frames (samples of position and velocity) corresponding to video taken at...
Resource Type:: Dataset

Big fishery, big data, and little crabs : using genomic methods to examine the seasonal recruitment patterns of early life stage dungeness crab (Cancer magister) in the California Current ecosystem

Creator:: Lee, Elizabeth M. J. and O'Malley, Kathleen
Abstract:: The California Current Ecosystem (CCE) is a dynamic marine ecosystem from which many socioeconomically important fisheries species are harvested. Here, a genotyping-by-sequencing (GBS) approach was used to examine genomic variation in an early life stage (megalopae) of the Dungeness crab (Cancer magister), which constitutes the most valuable single-species commercial fishery...
Resource Type:: Article
Full Text:: ; California Department of Fish and Wildlife, 2018; Oregon Department of Fish and Wildlife, 2018; Washington

A doubled down invasion of the northeast Pacific by the Asian mud shrimp, Upogebia major and its coevolved bopyrid isopod parasite, Orthione griffenis

Creator:: Chapman, John W., Li, Jingchun, McGowan, Michael F., Breitenstein, Ralph A., Appy, Ralph, Hieb, Kathryn A., Piotrowski, Christina N., and Elder, Leanne E.
Abstract:: Dramatic declines of the native northeast Pacific mud shrimp, Upogebia pugettensis over the last three decades have occurred in response to intense infestations by the Asian bopyrid isopod parasite, Orthione griffenis, that was introduced in the 1980s. We report herein the arrival of the Asian mud shrimp, Upogebia major, in...
Resource Type:: Article
Full Text:: , Oregon State University, 2030 SE Marine Science Dr., Newport OR 97366, USA 2Museum of Natural History

Connecting Science to Policymakers, Managers, and Citizens

Creator:: Lubchenco, Jane, Menge, Bruce A., Barth, John A., Carr, Mark H., Caselle, Jennifer E., Chan, Francis, Fulton-Bennett, Heather K., Gaines, Steven D., Kroeker, Kristy J., Milligan, Kristen, Palumbi, Steven R., and White, J. Wilson
Abstract:: Twenty years ago, the creation of a new scientific program, the Partnership for Interdisciplinary Studies of Coastal Oceans (PISCO), funded by the Packard Foundation, provided the opportunity to integrate—from the outset—research, monitoring, and outreach to the public, policymakers, and managers. PISCO’s outreach efforts were initially focused primarily on sharing scientific...
Resource Type:: Article
Full Text:: California and Oregon Departments of Fish and Wildlife have been critical PISCO partners for decades

Fine-scale spatial and temporal genomic variation among Dungeness crab Cancer magister larval recruits in the California Current Ecosystem

Creator:: Lee, Elizabeth M. J. and O'Malley, Kathleen G.
Abstract:: Dynamic marine environments can shape complex spatial and temporal patterns in the population connectivity of marine species, and this is often exemplified in species with long larval phases. Here, we used a genotyping-by-sequencing (GBS) approach to examine fine-scale spatial and temporal genomic variation among Dungeness crab Cancer magister larval recruits...
Resource Type:: Article
Full Text:: *, Kathleen G. O’Malley State Fisheries Genomics Lab, Coastal Oregon Marine Experiment Station, Department of

Do gray whales count calories? Comparing energetic values of gray whale prey across two different feeding grounds in the eastern North Pacific

Creator:: Hildebrand, Lisa, Bernard, Kim S., and Torres, Leigh G.
Abstract:: Predators must consume enough prey to support costly events, such as reproduction. Meeting high energetic requirements is particularly challenging for migrating baleen whales as their feeding seasons are typically restricted to a limited temporal window and marine prey are notoriously patchy. We assessed the energetic value of the six most...
Resource Type:: Article
Full Text:: Laboratory, Department of Fisheries and Wildlife, Marine Mammal Institute, Oregon State University, Newport

Drone Up! Quantifying Whale Behavior From a New Perspective Improves Observational Capacity

Creator:: Lemos, Leila, Chandler, Todd E., Torres, Leigh G., and Nieukirk, Sharon L.
Abstract:: During traditional boat-based surveys of marine megafauna, behavioral observations are typically limited to records of animal surfacings obtained from a horizontal perspective. Achieving an aerial perspective has been restricted to brief helicopter or airplane based observations that are costly, noisy, and risky. The emergence of commercial small unmanned aerial systems...
Resource Type:: Article
Full Text:: Institute, Department of Fisheries and Wildlife, Hatfield Marine Science Center, Oregon State University

Exploring biophysical linkages between coastal forestry management practices and aquatic bivalve contaminant exposure

Creator:: Scully-Engelmeyer, Kaegan, Granek, Elise F., Nielsen-Pincus, Max, Lanier, Andy, Rumrill, Steven S., Moran, Patrick, Nilsen, Elena, Hladik, Michelle L., and Pillsbury, Lori
Abstract:: Terrestrial land use activities present cross-ecosystem threats to riverine and marine species and processes. Specifically, pesticide runoff can disrupt hormonal, reproductive, and developmental processes in aquatic organisms, yet non-point source pollution is difficult to trace and quantify. In Oregon, U.S.A., state and federal forestry pesticide regulations, designed to meet regulatory...
Resource Type:: Article
Full Text:: the authority of Oregon Department Fish and Wildlife Scientific Taking Permits (#21207 and #22121

Dataset used for “The early life stages of California yellowtail (Seriola dorsalis) and white seabass (Atractoscion nobilis) respond to food particle taste more than smell.”

Creator:: Hawkyard, Matt, Langdon, Chris, Stuart, Kevin, and Drawbridge, Mark
Abstract:: This dataset was produced as a result of experiments conducted with simple and alginate complex particles that were used to evaluate feeding in California yellowtail and white seabass post larvae. Retention data was collected from a series of retention trials whereby particles were suspended in seawater for various lengths of...
Resource Type:: Dataset

Assessment of the causal linkages between forests and fish: implications for management and monitoring.

Creator:: Martens, Kyle D.
Abstract:: Understanding the causal links between riparian forests, streams, and salmonids is important to help understand the likely effects of forest management practices. Previous studies have identified three major causal pathways (Instream Cover, Light, and Hydrology) through which riparian forests influence streams, and ultimately stream fishes. To evaluate the potential importance...
Resource Type:: Capstone Project
Full Text:: Assessment of the causal linkages between forests and fish: implications for management and monitoring

ScholarsArchive@OSU

Fish Schooling Data Subset

Big fishery, big data, and little crabs : using genomic methods to examine the seasonal recruitment patterns of early life stage dungeness crab (Cancer magister) in the California Current ecosystem

A doubled down invasion of the northeast Pacific by the Asian mud shrimp, Upogebia major and its coevolved bopyrid isopod parasite, Orthione griffenis

Connecting Science to Policymakers, Managers, and Citizens

Fine-scale spatial and temporal genomic variation among Dungeness crab Cancer magister larval recruits in the California Current Ecosystem

Do gray whales count calories? Comparing energetic values of gray whale prey across two different feeding grounds in the eastern North Pacific

Drone Up! Quantifying Whale Behavior From a New Perspective Improves Observational Capacity

Exploring biophysical linkages between coastal forestry management practices and aquatic bivalve contaminant exposure

Dataset used for “The early life stages of California yellowtail (Seriola dorsalis) and white seabass (Atractoscion nobilis) respond to food particle taste more than smell.”

Assessment of the causal linkages between forests and fish: implications for management and monitoring.

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