Index Catalog // ScholarsArchive@OSU

The Effect of Iron Limitation on the Transcriptome and Proteome of Pseudomonas fluorescens Pf-5

Creator:: Lim, Chee Kent, Hassan, Karl A., Tetu, Sasha G., Loper, Joyce E., and Paulsen, Ian T.
Abstract:: One of the most important micronutrients for bacterial growth is iron, whose bioavailability in soil is limited. Consequently, rhizospheric bacteria such as Pseudomonas fluorescens employ a range of mechanisms to acquire or compete for iron. We investigated the transcriptomic and proteomic effects of iron limitation on P. fluorescens Pf-5 by...
Resource Type:: Article
Full Text:: University, Sydney, Australia, 2 USDA-ARS Horticultural Crops Research Laboratory and Department of Botany

Development and Evaluation of a 9K SNP Array for Peach by Internationally Coordinated SNP Detection and Validation in Breeding Germplasm

Creator:: Verde, Ignazio, Bassil, Nahla, Scalabrin, Simone, Gilmore, Barbara, Lawley, Cynthia T., Gasic, Ksenija, Micheletti, Diego, Rosyara, Umesh R., Cattonaro, Federica, Vendramin, Elisa, Main, Dorrie, Aramini, Valeria, Blas, Andrea L., Mockler, Todd C., Bryant, Douglas W., Wilhelm, Larry, Troggio, Michela, Sosinski, Bryon, Jose Aranzana, Maria, Arus, Pere, Iezzoni, Amy, Morgante, Michele, and Peace, Cameron
Abstract:: Correction 21 Jun 2012: Verde I, Bassil N, Scalabrin S, Gilmore B, Lawley CT, et al. (2012) Correction: Development and Evaluation of a 9K SNP Array for Peach by Internationally Coordinated SNP Detection and Validation in Breeding Germplasm. PLOS ONE 7(6): 10.1371/annotation/33f1ba92-c304-4757-91aa-555de64a0768.
Resource Type:: Article

Host-Selective Toxins of Pyrenophora tritici-repentis Induce Common Responses Associated with Host Susceptibility

Creator:: Pandelova, Iovanna, Figueroa, Melania, Wilhelm, Larry J., Manning, Viola A., Mankaney, Aakash N., Mockler, Todd C., and Ciuffetti, Lynda M.
Abstract:: Pyrenophora tritici-repentis (Ptr), a necrotrophic fungus and the causal agent of tan spot of wheat, produces one or a combination of host-selective toxins (HSTs) necessary for disease development. The two most studied toxins produced by Ptr, Ptr ToxA (ToxA) and Ptr ToxB (ToxB), are proteins that cause necrotic or chlorotic...
Resource Type:: Article
Full Text:: Cooperative State Research, Education and Extension Service (CSREES, grant#:2006-55600-16619) and in part by

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Creator:: Loper, Joyce E., Hassan, Karl A., Mavrodi, Dmitri V., Davis, Edward W., II, Lim, Chee Kent, Shaffer, Brenda T., Elbourne, Liam D. H., Stockwell, Virginia O., Hartney, Sierra L., Breakwell, Katy, Henkels, Marcella D., Tetu, Sasha G., Rangel, Lorena I., Kidarsa, Teresa A., Wilson, Neil L., van de Mortel, Judith E., Song, Chunxu, Blumhagen, Rachel, Radune, Diana, Hostetler, Jessica B., Brinkac, Lauren M., Durkin, A. Scott, Kluepfel, Daniel A., Wechter, W. Patrick, Anderson, Anne J., Kim, Young Cheol, Pierson, Leland S., III, Pierson, Elizabeth A., Lindow, Steven E., Kobayashi, Donald Y., Raaijmakers, Jos M., Weller, David M., Thomashow, Linda S., Allen, Andrew E., and Paulsen, Ian T.
Abstract:: We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological control and other multitrophic interactions with plants, microbes, and insects. Multilocus sequence analysis placed the strains in three sub-clades,...
Resource Type:: Article
Full Text:: , David M. Weller15, Linda S. Thomashow15, Andrew E. Allen16, Ian T. Paulsen3 1 Agricultural Research

Estimating Global ‘‘Blue Carbon’’ Emissions from Conversion and Degradation of Vegetated Coastal Ecosystems

Creator:: Pendleton, Linwood, Donato, Daniel C., Murray, Brian C., Crooks, Stephen, Jenkins, W. Aaron, Sifleet, Samantha, Craft, Christopher, Fourqurean, James W., Kauffman, J. Boone, Marba, Nuria, Megonigal, Patrick, Pidgeon, Emily, Herr, Dorothee, Gordon, David, and Baldera, Alexis
Abstract:: Recent attention has focused on the high rates of annual carbon sequestration in vegetated coastal ecosystems—marshes, mangroves, and seagrasses—that may be lost with habitat destruction (‘conversion’). Relatively unappreciated, however, is that conversion of these coastal ecosystems also impacts very large pools of previously-sequestered carbon. Residing mostly in sediments, this ‘blue...
Resource Type:: Article
Full Text:: , California, United States of America, 4 United States Environmental Protection Agency, Research Triangle

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

Creator:: Ohm, Robin A., Feau, Nicolas, Henrissat, Bernard, Schoch, Conrad L., Horwitz, Benjamin A., Barry, Kerrie W., Condon, Bradford J., Copeland, Alex C., Dhillon, Braham, Glaser, Fabian, Hesse, Cedar N., Kosti, Idit, LaButti, Kurt, Lindquist, Erika A., Lucas, Susan, Salamov, Asaf A., Bradshaw, Rosie E., Ciuffetti, Lynda, Hamelin, Richard C., Kema, Gert H. J., Lawrence, Christopher, Scott, James A., Spatafora, Joseph W., Turgeon, B. Gillian, de Wit, Pierre J. G. M., Zhong, Shaobin, Goodwin, Stephen B., and Grigoriev, Igor V.
Abstract:: Correction 5 Mar 2013: Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, et al. (2013) Correction: Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi. PLOS Pathogens 9(3): 10.1371/annotation/fcca88ac-d684-46e0-a483-62af67e777bd
Resource Type:: Article
Full Text:: , 2 Faculty of Forestry, Forest Sciences Centre, University of British Columbia, Vancouver, British

Prey Patch Patterns Predict Habitat Use by Top Marine Predators with Diverse Foraging Strategies

Creator:: Benoit-Bird, Kelly J., Battaile, Brian C., Heppell, Scott A., Hoover, Brian, Irons, David, Jones, Nathan, Kuletz, Kathy J., Nordstrom, Chad A., Paredes, Rosana, Suryan, Robert M., Waluk, Chad M., and Trites, Andrew W.
Abstract:: Spatial coherence between predators and prey has rarely been observed in pelagic marine ecosystems. We used measures of the environment, prey abundance, prey quality, and prey distribution to explain the observed distributions of three co-occurring predator species breeding on islands in the southeastern Bering Sea: black-legged kittiwakes (Rissa tridactyla), thick-billed...
Resource Type:: Article
Full Text:: Mammal Research Unit, Fisheries Centre, and Department of Zoology, University of British Columbia

Host Identity Matters in the Amphibian-Batrachochytrium dendrobatidis System: Fine-Scale Patterns of Variation in Responses to a Multi-Host Pathogen

Creator:: Gervasi, Stephanie, Gondhalekar, Carmen, Olson, Deanna H., and Blaustein, Andrew R.
Abstract:: Species composition within ecological assemblages can drive disease dynamics including pathogen invasion, spread, and persistence. In multi-host pathogen systems, interspecific variation in responses to infection creates important context dependency when predicting the outcome of disease. Here, we examine the responses of three sympatric host species to a single fungal pathogen,...
Resource Type:: Article
Full Text:: , Pacific Northwest Research Station, Corvallis, Oregon, United States of America, 4 Environmental Sciences

Multivariate Models of Adult Pacific Salmon Returns

Creator:: Burke, Brian J., Peterson, William T., Beckman, Brian R., Morgan, Cheryl, Daly, Elizabeth A., and Litz, Marisa
Abstract:: Most modeling and statistical approaches encourage simplicity, yet ecological processes are often complex, as they are influenced by numerous dynamic environmental and biological factors. Pacific salmon abundance has been highly variable over the last few decades and most forecasting models have proven inadequate, primarily because of a lack of understanding...
Resource Type:: Article
Full Text:: to the Columbia River after two years [3]. Recent research has shown that juvenile salmon survival

Comparative Genome Structure, Secondary Metabolite, and Effector Coding Capacity across Cochliobolus Pathogens

Creator:: Condon, Bradford J., Leng, Yueqiang, Wu, Dongliang, Bushley, Kathryn E., Ohm, Robin A., Otillar, Robert, Martin, Joel, Schackwitz, Wendy, Grimwood, Jane, MohdZainudin, NurAinIzzati, Xue, Chunsheng, Wang, Rui, Manning, Viola A., Dhillon, Braham, Tu, Zheng Jin, Steffenson, Brian J., Salamov, Asaf, Sun, Hui, Lowry, Steve, LaButti, Kurt, Han, James, Copeland, Alex, Lindquist, Erika, Barry, Kerrie, Schmutz, Jeremy, Baker, Scott E., Ciuffetti, Lynda M., Grigoriev, Igor V., Zhong, Shaobin, and Turgeon, B. Gillian
Abstract:: The genomes of five Cochliobolus heterostrophus strains, two Cochliobolus sativus strains, three additional Cochliobolus species (Cochliobolus victoriae, Cochliobolus carbonum, Cochliobolus miyabeanus), and closely related Setosphaeria turcica were sequenced at the Joint Genome Institute (JGI). The datasets were used to identify SNPs between strains and species, unique genomic regions, core secondary...
Resource Type:: Article
Full Text:: of America, 6 Department of Biology, Faculty of Science, Universiti Putra Malaysia, Serdang, Selangor

ScholarsArchive@OSU

The Effect of Iron Limitation on the Transcriptome and Proteome of Pseudomonas fluorescens Pf-5

Development and Evaluation of a 9K SNP Array for Peach by Internationally Coordinated SNP Detection and Validation in Breeding Germplasm

Host-Selective Toxins of Pyrenophora tritici-repentis Induce Common Responses Associated with Host Susceptibility

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Estimating Global ‘‘Blue Carbon’’ Emissions from Conversion and Degradation of Vegetated Coastal Ecosystems

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

Prey Patch Patterns Predict Habitat Use by Top Marine Predators with Diverse Foraging Strategies

Host Identity Matters in the Amphibian-Batrachochytrium dendrobatidis System: Fine-Scale Patterns of Variation in Responses to a Multi-Host Pathogen

Multivariate Models of Adult Pacific Salmon Returns

Comparative Genome Structure, Secondary Metabolite, and Effector Coding Capacity across Cochliobolus Pathogens

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