A previous study showed that ammonia oxidation by the Thaumarchaeota Nitrosopumilus maritimus (group 1.1a) was resistant
to concentrations of the C₈ 1-alkyne, octyne, which completely inhibits activity by ammonia-oxidizing bacteria. In this study, the
inhibitory effects of octyne and other C₂ to C₁₀ 1-alkynes were evaluated on the nitrite production...
Heat activated cooling has the potential of utilizing thermal sources that currently go unused such as engine exhaust heat or industrial waste heat. Using these heat sources can provide enhanced energy utilization and reduced fuel usage in applications where cooling is needed. The concept developed here uses waste heat from...
The tobacco etch potyvirus (TEV) polyprotein is proteolytically processed by three viral proteinases (NIa,
HC-Pro, and P1). While the NIa and HC-Pro proteinases each provide multiple functions essential for viral
infectivity, the role of the P1 proteinase beyond its autoproteolytic activity is understood poorly. To determine
if P1 is necessary...
Groundwater–surface-water (GW-SW) interactions in streams are difficult to quantify because of heterogeneity in hydraulic and reactive processes across a range of spatial and temporal scales. The challenge of quantifying these interactions has led to the development of several techniques, from centimeter-scale probes to whole-system tracers, including chemical, thermal, and electrical...
The authors of this paper met at a summer institute sponsored by the Oregon Collaborative for Excellence in the Preparation of Teachers (OCEPT). Edwards is a researcher in undergraduate mathematics education. Ward, a pure mathematician teaching at an undergraduate institution, had had little exposure to mathematics education research prior to...
The Pacific lamprey (Entosphenus tridentatus) is in decline in the Columbia River Basin, and translocating adult lamprey to bypass difficult migration corridors has been implemented since 2000. We describe and report results from two current translocation programs, provide context for use of translocation, and discuss potential benefits, risks, and uncertainties....
The isotopic composition of the dissolved inorganic carbon (DIC) collected at sites of active methane discharge on Hydrate Ridge, Oregon, reveals anaerobic methane oxidation mediated by bacteria, with δ13CDIC reaching values as low as –48‰ in the upper 4 cm of the sediment. In spite of the high sulfide levels...
Endogenous small RNAs (endo-siRNAs) interact with Argonaute (AGO) proteins to mediate
sequence-specific regulation of diverse biological processes. Here, we combine deep-sequencing and
genetic approaches to explore the biogenesis and function of endo-siRNAs in C. elegans. We describe
conditional alleles of the dicer-related helicase, drh-3, that abrogate both RNA interference and...
During the Internal Waves on the Continental Margin (IWAVES) field experiments of 1996 and 1997 off of Mission Beach, California (32.75° N), we observed energetic, dirunal-band motions across the entire study site in water depths ranging from 15 to 500 m and spanning a cross-shore distance of 15 km. The...
The Chloroflexi CL500-11 clade contributes a large proportion of the bacterial biomass in the oxygenated hypolimnia of deep lakes worldwide, including the world's largest freshwater system, the Laurentian Great Lakes. Traits that allow CL500-11 to thrive and its biogeochemical role in these environments are currently unknown. Here, we found that...