Pacific Northwest and California freshwater resources are key elements in the life history and ecology of Pacific salmon and steelhead listed as threatened or endangered under the Endangered Species Act. Risk to listed Pacific salmonid species can be assessed by evaluating the spatial and temporal co-occurrence of salmonid species at...
Chlorpyrifos (CPF) is a widely used broad-spectrum organophosphate insecticide. Following exposures, CPF and its more toxic oxon metabolite (CPFO) elicit neurotoxic effects by inhibiting the activity of the acetylcholinesterase enzyme (AChE), resulting in altered fitness and death at high doses. Following exposure, organisms bioactivate CPF to CPFO through the Cytochrome...
A time dependent model of the shallow, tropical convective boundary layer is
developed and tested. To simplify the treatment of thermodynamic processes and
return to first principles of physics, conserved quantities of entropy and total
water density are used as primary model variables. In addition, a new shallow
cumulus parameterization...
Since the isolation of the Oregon sockeye salmon virus (OSV) in
1958, extensive investigations have been undertaken to characterize
the properties of this virus. The results of these investigations
have indicated that OSV is a single-stranded RNA virus which contains
essential lipids and has a density of 1.16 gm/cm³ in...
The main objective of the study was to identify potential groundwater problem areas in Western Marion County using a geographic information system (GIS) and the Oregon Water Resources Department's (OWRD's) well log database (see figure 1). Potential groundwater problem areas were identified based on their mean static water level. According...
The giant hairy desert scorpion, Hadrurus arizonensis, is a long-lived species
of North American scorpion that is presented here as an important model for research
in mating systems evolution and sexual selection. Many behaviors found in this
species were undocumented and are described here for the first time. This thesis...
Purpose
The purpose of this project is to aid the Umpqua Regional Council of Governments as
they try to identify buildable lands in Douglas County, Oregon particularly in the cities of
Reedsport and Sutherlin. This project will help Reedsport upgrade its recently completed
Buildable Lands Inventory and provide Sutherlin with...
Water fluoridation is considered one of the top ten greatest health achievements of the twentieth century due to its effectiveness in reducing the prevalence of dental caries. However, despite extensive research on the subject, there is little information currently available about how the constituents of drinking water affect the uptake...
The project objective was to characterize stabilization of human recombinant Factor VIII (FVIII) with two surfactants, Pluronic® F-68 (F68) and Polysorbate 80 (PS80). Factor VIII is an essential blood clotting protein manufactured for treatment of Hemophilia A. Factor VIII has multiple hydrophobic regions requiring the use of amphiphilic molecules, such...
Coibamide A is a highly methylated cyclic depsipeptide isolated from Panamanian marine filamentous cyanobacteria as part of an International Cooperative Biodiversity Groups (ICBG) program based in Panama. This structurally unique agent exhibits potent cancer cell toxicity with an unprecedented selectivity profile in the National Cancer Institute (NCI) 60 cell line...
The free amino acid content of the intracellular pools in higher
marine fungi was determined by thin-layer and gas-liquid chromatography.
The organisms investigated include:
Ascomycetes; Nais inornata, Leptosphaeria oraemaris, Corollospora
maritima, Haligena elaterophora, Halosphaeria mediosetigera, Halosphaeria
appendiculata, Halosphaeria quadriremis, Lignincola Laervis
and Remispora hamata, and Fungi Imperfecti; Zalerion maritimum and...
Achlys triphylla, a member of a medicinally active family
containing alkaloids, was examined phytochemically to determine its
possible value as a source of medicinal agents.
Pharmacological testing of the crude ethanol extract exhibited
a competitive inhibition of acetylcholine and histamine. Purification
of alkaloid 'A' from the crude ethanol extract and...
School systems have an important responsibility to continuously
examine and review their educational programs to determine if the
programs satisfy the needs of the youth they serve. Systematically
collected data derived from former and present students can enable
the school system to appraise its effectiveness in fulfilling the aim
it...
The three dimensional structure of both a ligand and its cognate receptor are required for the success of structure-assisted drug design. This thesis reports the crystal structure of hectochlorin, a small, bioactive molecule, and the steps toward determining the crystal structure of an RNA molecule that is an attractive target...
The present increasing need for the development of empirical hypotheses that explain the decisionmakers' behavior towards risk is to provide an understanding of the framework within which an industry operates. Such hypotheses could facilitate the implementation of policies designed to solve problems identified within an industry and could also provide...
Cable yarding of first thinning size material from plantations of Pinus radiata in South Eastern Australia 15 simuiated using a computer model. Production rates, expressed in cubic metres per hour and production cost, expressed in dollars per cubic metre were derived using the model to simulate cable yarding under set...
Selenoprotein W (SeW) is a protein whose function is unknown, but potentially plays a vital role in calcium metabolism, as an indirect link has been established with white muscle disease (WMD). White muscle disease occurs in selenium deficient animals, and is characterized by the precipitation of calcium in muscle, leading...
Pacific madrone, tanoak, and California black oak are the most economically promising native California hardwoods. Volume and value data indicate upward trends in growing stock levels and prices received for their products. These trends are likely to continue. They suggest research is particularly needed for: (1) seed fall and
regeneration,...
A striking feature in the study of Riemannian manifolds of positive sectional curvature
is the narrowness of the collection of known examples. In this thesis, we examine the
structure of the cohomology rings of three families of compact simply connected seven dimensional
Riemannian manifolds that may contain new examples of...
Knowledge of a compound's degradation pathway is crucial to the assessment of risk at contaminated sites. Pentachlorophenol and its metabolic products can serve as model compounds to study the fate and transport of halogenated aromatic compounds in the environment. Acclimation of anaerobic sewage sludge to pentachlorophenol produced a microbial consortium...
Patterning of metal oxides typically involves a multi step process, involving
depositing a resist, patterning that resist with some form of lithography, etching the
oxide through the resist, and finally removing. This process can be simplified if the
resist is removed and replaced with a metal oxide that can be...
The Oregon State University (OSU), Hydro Mechanical Fuel test Facility (HMFTF) is designed to hydro-mechanically test prototypical plate type fuel. OSU's fuel test program is a part of the Global Threat Reduction Initiative (GTRI), formerly known as the Reduced Enrichment for Research and Test Reactor program. One of the GTRI's...
The hydrologic function of a landscape is an important concept for understanding the presence, movement and availability of water. The Camp Creek Paired Watershed Study (CCPWS) site in Central Oregon has been utilized to investigate the impacts of western juniper on watershed hydrologic function since 1993. The research presented here...
This paper traces the rise and fall of, in its day, one of the most important fisheries in the world. The fishery exhibits the impact of changes in demand and supply brought about by technological advance in three noticeable shocks. Fishing is said to have commenced in 495AD. So prolific...
Full Text:
AND FALL OF THE YARMOUTH HERRING FISHERY
Philip Rodgers
Lincoln International Business School
The primary objective of this thesis is to develop a process for fabricating integrated circuits based on thin-film transistors (TFTs) using zinc tin oxide (ZTO) as the channel layer. ZTO, in contrast to indium- or gallium-based amorphous oxide semiconductors (AOS), is perceived to be a more commercially viable AOS choice...
The purpose of this work was to design a system for measuring
the velocity of a powder actuated fastener or drivepin during penetration.
This system would provide a tool for further investigation
into drivepin penetration characteristics. The main characteristic
of interest is the instantaneous acceleration from which the forces
on...
The application of general circulation models (GCMs) to stratospheric chemistry and transport both permits and requires a thorough investigation of stratospheric water vapor. The National Center for Atmospheric Research has redesigned its GCM, the Community Climate Model (CCM2), to enable studies of the chemistry and transport of tracers including water...
Skeletal muscle mitochondria are highly plastic organelles, integral to whole-body health. High-fat diet (HFD) and exercise remodel the skeletal muscle mitochondria. Whereby, altered skeletal muscle mitochondrial function is linked to decreased skeletal muscle insulin sensitivity which can be reversed by exercise. However, the mechanisms that contribute to skeletal muscle remodeling...
A growth model is developed for coho salmon which accounts for
temperatures and feeding rates typically encountered in fish hatchery
operation. Feeding rates utilized by the model ranged from
maintenance to maximum utilizable rations. The model is derived from
an empirical equation for maximum growth rate, and a theoretical
equation...
We develop a technique to express the nucleon pole strength and bare mass in terms of renormalized quantities. Starting from a general unrenormalized self energy we determine the bare mass and the pole strength. For determining the pion content of the nucleon we discuss the leading renormalization loop. We relate...
Magnetic particle imaging (MPI) is a biomedical imaging technique which detects the presence of magnetic nanoparticles which have been introduced into the specimen prior to imaging. MPI has shown promise for real-time imaging with spatial resolution comparable to magnetic resonance imaging (MRI). MPI research has focused predominantly on the development...
The potassium salts of a series of 1-vinylcycloalk-3-en-l-ols were found to undergo ring expanding [1, 3]-sigmatropic shifts at 25° when dissolved in hexamethylphosphoramide (HMPA) or 1, 2-dimethoxyethane (DME) with 18-crown-6. The yields and reaction rates were compared with those of the corresponding Siloxy-Cope ring expansions. These anionic cases showed about...
Coastal vegetation dampens waves which can provide benefits to the local area, but existing literature shows large variations in the degree of wave height attenuation depending on plant properties and wave conditions. Better knowledge of how to predict the wave height decay accurately in different types of vegetation may help...
Childhood tooth decay is a prevalent and concerning public health issue that is often misunderstood or dismissed. In Oregon specifically, over 50% of children have experienced at least one instance of tooth decay and these rates are even higher for marginalized communities such as children living in poverty, children of...
: ___________________________________________________________
Philip McFadden
Childhood tooth decay is a prevalent and concerning public health issue that is
A novel mode of shallow aquifer management could increase the volumetric potential and distribution of underground, freshwater storage: Shallow aquifer storage and recovery (SASR). In this mode, water is efficiently stored in basin fill aquifers with strong hydraulic connection to surface water. Regional numerical modeling can provide a linkage between...
Blood, liver, kidney, femur, and ovaries were assayed
from female Wistar rats following oral administration of
uranyl nitrate. Three uranium concentrations were
studied for six time periods ranging from 4 hours to 240
hours following gavage. Uranium burdens of tissues were
determined by neutron activation and delayed fission
neutron counting...
Gram positive cocci isolated from Oregon wines
were characterized and their relative malate fermentation
abilities compared. They were heterofermentative,
catalase negative, and facultatively anaerobic. Glucose,
fructose, cellobiose, maltose, ribose, trehalose, salicin
and esculin were fermented by all strains. Arabinose was
fermented weakly but lactose, raffinose, sucrose, xylose,
rhamnose, mannose and...
Heat integrated distillation has been studied using an experimental
column built for that purpose. Heat integration involves the
use of intermediate reboilers and condensers to increase the thermal
efficiency of distillation. The intermediate reboiler and condenser
systems used in this work were designed so that the experimental
column could be...
The semiconductor gallium arsenide (GaAs) has many potential
advantages over the more widely used semiconductor silicon (Si).
These include higher low field mobility, semi-insulating substrates,
a direct band-gap, and greater radiation hardness. All these
advantages offer distinct opportunities for implementation of new
circuit functions or extension of the operating conditions...
Several hardware-based security improvements to Near Field Communication (NFC) and Radio-Frequency Identification (RFID) systems are developed and presented. The improvements are intended to be used in conjunction with software encryption to ensure robust security. Two main implementations for a more secure NFC or RFID system are presented: a jamming system,...
The Nanga Parbat-Haramosh massif (NPHM) is a north-south trending
structural and topographic high, which interrupts the east-west trend
of the Himalaya in northern Pakistan. Previously, the massif was
thought to be bounded by the Main Mantle thrust (MMT), a north-dipping
thrust along which the Kohistan-Ladakh arc was thrust south over...
Full Text:
Of
Philip L. Verplanck for degree of Master of Science in
Geology presented on November 17, 1986
The objectives for this study were to determine the causes of
slime formation in activated sludge treatment and to recommend
possible control measures. The primary problem was a seasonal
filamentous bulking which was caused by the mold, Geotrichum
candidum. During the winter, mycelial fibers appeared and formed a
free floating...
Records of 1 April snow water equivalent (SWE) are examined here using multiple linear regression against reference time series of temperature and precipitation. This method permits 1) an examination of the separate roles of temperature and precipitation in determining the trends in SWE; 2) an estimation of the sensitivity of...
Recent emphasis on range improvement of sagebrush-bunch-grass
types in Oregon has underscored the need for better understanding
of their importance to deer winter range management. The
objectives of this study were to evaluate the impact of various sagebrush
control practices on the composition, production, and utilization
of deer forage plants...
Here presented is a photographic catalogue, a key, and literature review for the 35 genera and 90 species of lepturine longhorn beetles (Cerambycidae: Lepturinae) found in the Pacific Northwest. Several nomenclatural changes, recognized by the global taxonomic community, but previously unknown to North American authors, are adopted, and one new...
The first cycle of seismic waves recorded at distances of 45,
300 and 355 km. from the GNOME nuclear explosion was used to determine
whether the near source wave characteristics at 0.3 km.
could be determined from distance measurements. Both head wave
and body wave propagation were considered. First the...
Exogenous and indigenous inclusions are defined and described
with respect to their origins and effects in cast steel. Means of
minimizing exogenous inclusions thru prevention of their formation
as well as entrapment in the mold filling system are discussed. Indigenous
inclusions arise from elements normally present in steel,
principally oxygen,...
Microtus canicaudus Miller, the gray-tailed vole, was studied
in the field and laboratory in order to clarify aspects of the relationship
of this species to its habitat. All trapping and sampling was done
on permanent pasture land in the William L. Finley National Wildlife
Refuge 12 miles south of Corvallis,...
The usefulness of preplant nitrogen (N) in establishing
alfalfa in colder production areas has not been
well characterized. This study was conducted to determine
the effect of preplant N and soil temperature on
yield, percent N derived from biological nitrogen fixation
(PBNF), and shoot N concentration in alfalfa (Medicago
sativa...
Two small adjacent watersheds on the west-central edge of the
Willamette Valley of western Oregon were studied. Information was
gathered on existing conditions to determine the suitability of the two
watersheds for a paired-watershed study design.
A soil survey was conducted using slightly modified soil series
previously established for the...
Delayed neutron counting (DNC) is a variation of neutron activation analysis applicable only to fissionable elements. Briefly, it
involves exposing a sample to the neutron flux in a reactor to induce
fission, then quickly retrieving the sample to count the delayed
fission neutrons emitted. These are proportional to the amount...
The study involves the establishment, management, and behavioral
observations of Nomia melanderi Cockerell and Megachile rotundata
(Fabricius) in California, a survey of native bees within western Fresno
County, a determination of selfing and/or parthenocarpy in two fields of
alfalfa, and observations on the honeybee as an alfalfa pollinator.
The alkali...
We exhibit long-lived resonances in scattering from two-dimensional soft cage potentials comprised of three and four Gaussian peaks. Specific low-energy resonances with very narrow width are shown to correspond to classical multiple-reflection events. These states have much larger probability densities inside the cage than outside and mimic bound states in...
We used recent phenomenological form factors to calculate the effect of on-shell
two-pion exchange in nucleon-nucleon scattering below the two-pion production
threshold. As expected, the contributions of partial wave amplitudes are all negligible.
We also noticed that the relativistic spin-operator decomposition of the
scattering amplitude is not unique at certain...
In recent years, the methyl erythritol phosphate (MEP) pathway to isoprenoids has been the subject of intensive research. The interest is because isoprenoids have important roles in many cellular processes essential for the survival of several pathogenic organisms, making the inhibition of this pathway an attractive target for the drug...
The discovery of the methylerythritol phosphate pathway (the MEP pathway) as an alternate pathway for isoprenoid biosynthesis in some organisms including most bacteria, malarial parasites and plants, but not in animals, has stimulated extensive studies in this area. Research has revealed the potential of finding novel antibacterials, antimalarial drugs, and...
The objective of our study was to investigate the effect of selenium on
selenoprotein W. Western blot analysis indicated that selenoprotein W is present in
muscle, brain, testis and spleen of rat tissues. Tissue distribution of selenoprotein W
was not altered in rats fed various selenium levels. Among muscle, brain,...
This dissertation details the investigation of an alternate pathway to
isoprenoids that occurs in plants and microorganisms, the non-mevalonate
pathway. This exploration of the pathway focuses on the second step, the
conversion of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methylerythritol-4-phosphate (MEP) by the enzyme DXP isomeroreductase (DXR). These studies led to an appreciation...
This dissertation describes studies of isoprenoid biosynthesis in the
phytoflagellate Euglena gracilis. Elucidation of a novel isoprerioid pathway, the 2-Cmethyl-D-erythritol-4-phosphate (MEP) pathway, in addition to the generally known
mevalonate (MVA) pathway, led to extensive exploration of the distribution of both pathways in a variety of organisms. To date, photosynthetic eukaryotes...
Rat selenoprotein W (SeW) promoter activity was investigated using different concentrations of cadmium, copper, and zinc. Two fragments (404bp and 1265bp) of the SeW promoter, containing a single metal response element (MRE), were ligated into the multiple cloning site of a pGL3-Basic reporter plasmid. The constructs were transfected into cultured...
The isoprenoid pathway is one of the major biosynthetic pathways of secondary metabolites. Isoprenoids with a C₂₀ skeleton are known as diterpenoids and are derived from the common precursor, geranylgeranyl diphosphate (GGPP). This dissertation describes approaches to discover the diterpene synthase enzymes which provide the backbone structures for pleuromutilin and...
The quantification and description of sea surface temperature (SST) is critically important because it can influence the distribution, migration, and invasion of marine species; furthermore, SSTs are expected to be affected by climate change. Recent research indicates that there has been a warming trend in ocean temperatures over the last...
The interactions of a model synthetic liquid fuel reactant (furan) with a model
hydrodeoxygenation catalyst (clean and sulfided single crystal molybdenum)
were investigated using the following UHV tools: Auger electron spectroscopy
(AES), low energy electron diffraction (LEED), and temperature programed
reaction spectroscopy (TPRS). In addition to furan, the reactions of...
Forests play an integral role in the global carbon cycle, regulating the atmospheric CO₂ concentration by sequestering nearly one third of anthropogenic carbon emissions and storing carbon for centuries. Forest ecosystems are integrated into the culture, ecology, and economy of western North America, supporting wildlife habitat, local economies, recreation, and...
The purpose of this study was to document the initial change in vegetative canopy cover
following winter seismic exploration on the North Slope of Alaska. The study conducted herein
focuses solely on the impact to wet sedge meadow vegetation.
The overarching goal of this study is to contribute some level...
Methodologies that detect biologically active substances have important potential applications for medical diagnostics, drug discovery, and chemical and biological anti-terrorism efforts. The wide spectrum of potential analytes that induce a physiological response dictates that novel techniques be developed to more rapidly screen and characterize agents that are more economical and...
Selenium deficiency in rats results in increased carbon metabolism,
approaching twice the rate of selenium supplemented animals
(normal). This is also reflected in a 50 percent increase in lysosomal
enzyme activity in tissues of selenium deficient animals.
Isolation of rat liver lysosomes shows a 17 percent increase in
membrane thickness...
Blood vessel injury was found to release intracellular pools of protein
D-aspartyl/L-isoaspartyl carboxyl methyltransferase (PIMT) into the extracellular
milieu, where it became trapped. Trapped PIMT was able to utilize radiolabeled
S-adenosyl-L-methionine (AdoMet) introduced into the circulation to methylate
blood vessel proteins containing altered aspartyl residues specifically at the site
of...
The objective of this study was to further determine the distribution of
selenoprotein W (SeW) in tissues from rats and sheep fed different selenium levels and to
search for the possible functions of this protein. In the rat study a total of 28 rat tissues
were examined and SeW was...
The primary purpose of this study was to replicate a study of
Abel and Sahinkaya which investigated the emergence of race and sex
preferences of upper middle socioeconomic status Caucasian
children. This study provided a good match with respect to socioeconomic
status, race, and sex; however, the number of subjects...