The abilities of plant biologists to characterize the genetic basis of physiological traits are limited by their abilities to obtain quantitative data representing precise details of trait variation and mainly to collect this data on a high-throughput scale at low cost. Deep learning-based methods have demonstrated unprecedented potential to automate...
Semantic image segmentation is a relatively difficult task in computer vision. With the advent of deep learning, semantic image segmentation is increasingly of interest for researchers because of the excellent predictions from Convolutional Neural Network (CNN). However, CNNs have proven to struggle with obtaining global context of image due to...
Wheat (Triticum aestivum L.) is one of the most important crops in the world. It has been and continues to be one of the main sources of food for humans and animals. Although traditional wheat breeding has contributed greatly to the improvement of wheat both in productivity and biotic/abiotic stress...
A significant body of research demonstrates that phytochemical intake favorably influences hepatic metabolism via a number of different biological mechanisms. Other research has shown a positive effect of certain phytochemicals on kidney health, specifically in ameliorating symptoms of kidney disease. The current research used three separate studies that tested the...
Hard Fescue (Festuca longifolia Thuill.) has potential for in
creased turf use but does not respond well to normal seed production
management practices in Oregon. Field burning (the normal residue
management practice) results in reduced seed yields in commercial hard
fescue seed production fields but stimulates seed production in Chewings...
A fossil-calibrated phylogenetic framework based on exemplars from each of the four taxonomic sections within Pinus was created using multiple nuclear and chloroplast loci. Calibration at the well-defined subgeneric split within Pinus with either fossil leaves and cones (ca. 45 million years ago) or fossil wood (ca. 85 million years...
Sugar pine and western white pine are widely distributed, economically valuable, and ecologically important native tree species in North America. However, white pine blister rust (WPBR), caused by a non-native fungal pathogen, Cronartium ribicola J.C. Fisch. in Rabh., has substantially affected populations of these species. Cronartium is an obligate parasite,...
Managers of forest and plantation ecosystems are encountering growing problems involving plant pathogens and the expanding geographic ranges of these pathogens. Historically unexposed stands are exceptionally vulnerable when a non-native pathogen is introduced because these pathogens can cause devastating disease in a host population that lacks co-evolved resistance mechanisms. One...
Nutrigenomics is a branch of nutrition that seeks to elucidate the relationship between dietary components and expression of genes. Certain bioactive compounds present in the diet have the potential to modulate transcription of genes through their interactions with ligand-dependent nuclear receptors, a series of transcriptional regulators capable of sensing intracellular...
Plant sexual reproduction requires a broad array of molecular mechanisms to proceed successfully. Some of these mechanisms are well-studied, but our knowledge of them as a whole is fundamentally incomplete. Pollen tube growth is a key part of this process, facilitating the delivery of the sperm cells to the female...
Quaking aspen (Populus tremuloides Michx) is a species with high phenotypic plasticity and a broad distribution that, in the last decade, has experienced climate stress-induced mortality called Sudden Aspen Decline (SAD). In order to help mitigate the effects of SAD in the future, we need a better understanding of aspen’s...
Mutation of repetitive DNA by repeat-induced point mutation (RIP) is a process that occurs in many filamentous fungi of the Ascomycota during the sexual cycle. Concurrently, direct DNA repeats are often deleted by homologous recombination at high frequency during the sexual cycle. Thus, the processes of RIP and deletion compete...
The relative role of cospeciation and host switching in the phylogenetic history of
ascomycete foliar symbionts is addressed in the orders Leotiales and Rhytismatales, fungi
associated predominantly with Pinaceae (Coniferales). Emphasis is placed on comparing
the evolution of the sister genera Pseudotsuga and Larix (Pinaceae) with that of the
pathogenic...
The objectives of the experiment were to: 1) determine the relationship
between overstory canopy cover and ungulate herbivory on understory production
composition and diversity and 2) determine the effects of timber harvest, ungulate
herbivory and season of use on botanical composition and nutritional quality of
beef cattle diets. Three randomly...
Society uses massive quantities of wood fiber in production of paper, and demand for fiber is projected to increase further as production of biofuels from fermentation of plant cellulosic materials increases. Because these end uses generally require the costly step of removing of lignin, wood with reduced or more easily...
New highly polymorphic simple sequence repeat (SSR) markers for European hazelnut (Corylus avellana L.). were developed from several sources. The markers were characterized, and segregation in a mapping population allowed to assign them to linkage groups. Their transferability across genera and species in the Betulaceae family was investigated. SSR markers...
Recent science education reforms have placed a large emphasis on inquiry-based teaching strategies as an effective way of improving conceptual understanding of science principles, comprehension of the nature of scientific inquiry, and development of the abilities for inquiry (NRC, 1996). To better understand the relationship between inquiry-based instruction and student...
The level of polymorphisms of many biochemical and DNA markers are low in
cultivated sunflower (Helianthus annuus L.). The number of mapped public DNA
markers is limited. Molecular markers have not been developed for the most
important diseases of sunflower, such as downy mildew. The objectives of this
study were...
This dissertation consists of three papers on agricultural nonpoint source pollution and control. The first paper focuses primarily on agricultural land use changes under alternative conservation policies. The second and third papers address environmental implications of these policies and their cost effectiveness. In the first paper, the effect of alternative...