Gramene (http://www.gramene.org) is a comparative genome mapping database for grasses and a community resource for rice. Rice, in addition to being an economically important crop, is also a model monocot for understanding other agronomically important grass genomes. Gramene replaces the existing AceDB database ‘RiceGenes’ with a relational database based on...
Gramene (http://www.gramene.org/) is a comparative genome database for cereal crops
and a community resource for rice. We are populating and curating Gramene with
annotated rice (Oryza sativa) genomic sequence data and associated biological information
including molecular markers, mutants, phenotypes, polymorphisms and Quantitative Trait
Loci (QTL). In order to support queries...
PREMISE OF THE STUDY: We report the de novo assembly and characterization of the transcriptomes of Brachypodium sylvaticum
(slender false-brome) accessions from native populations of Spain and Greece, and an invasive population west of Corvallis,
Oregon, USA.
METHODS AND RESULTS: More than 350 million sequence reads from the mRNA libraries...
BACKGROUND: Triticum monococcum (2n) is a close ancestor of T. urartu, the A-genome progenitor of cultivated hexaploid
wheat, and is therefore a useful model for the study of components regulating photomorphogenesis in diploid wheat. In
order to develop genetic and genomic resources for such a study, we constructed genome-wide transcriptomes...
Full Text:
monococcum
Samuel E. Fox1."¤a, Matthew Geniza1,2.", Mamatha Hanumappa1., Sushma Naithani1,3, Chris
Advancements in molecular biology and computer science have enabled researchers the ability to investigate the transcriptome – the quantification of an organism’s RNA transcripts in response to its environment on a system wide scale. The collective chapters of this thesis utilize high-throughput RNA sequencing, which produces hundreds of millions of...
Oomycetes are some of the most devastating pathogens, causing upwards of billions of dollars of damage each year to plants. They also diminish ecological diversity and health through the destruction of trees and shrubs. The genome sequence of Pseudoperonospora cubensis, an obligate plant pathogen and causative agent of downy mildew...
Symbiosis is the close and protracted interaction between organisms. The molecular interactions that occur during symbiosis are complex with multiple barriers that must be overcome. Many Gram-negative, host-associated bacteria use a type III secretion system to mediate associations with their eukaryotic hosts. This secretion system is a specialized apparatus for...