Dataset
 

Supplemental data to "A draft genome and transcriptome of common milkweed (Asclepias syriaca) as resources for evolutionary, ecological, and molecular studies in milkweeds and Apocynaceae"

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https://ir.library.oregonstate.edu/concern/datasets/vd66w525h

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Abstract
  • This dataset contains a draft assembly of the common milkweed (Asclepias syriaca) nuclear genome, linkage group information, and gene family counts for Asclepias and related species. The genome assembly is accompanied by annotation of gene models, repeat models, transfer RNAs, and open reading frames, and mapping information of Asclepias transcripts, Calotropis transcripts, and Coffea proteins onto the assembled scaffolds. The linkage group information includes data input into the linkage group analysis, R scripts for processing, and a final list of scaffolds assigned to linkage groups. Additional data includes the coding sequence alignment of P5βR paralogs described in the article and a table of gene family counts in Asclepias, other Apocynaceae, coffee (Coffea), and grape (Vitis).
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  • Weitemier, Kevin A. (2017): Supplemental data to "The genome and transcriptome of common milkweed (Asclepias syriaca): resources for evolutionary, ecological, and molecular studies in milkweeds and Apocynaceae". Oregon State University. Dataset. https://doi.org/10.7267/N9M61HDR
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Related Items
  • Related item: Weitemier, K. A. (2016). Genomic Investigations of Diversity within the Milkweed Genus Asclepias, at Multiple Scales (Doctoral dissertation).
  • Website
  • Weitemier K, Straub SCK, Fishbein M, Bailey CD, Cronn RC, Liston A. 2019. A draft genome and transcriptome of common milkweed (Asclepias syriaca) as resources for evolutionary, ecological, and molecular studies in milkweeds and Apocynaceae. PeerJ 7:e7649 https://doi.org/10.7717/peerj.7649
Funding Statement (additional comments about funding)
  • Funding for this work is provided by the National Science Foundation Division of Environmental Biology awards 0919389 (to M.F.) and 0919583 (to R.C.C. and A.L.). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
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  • Intellectual Property (patent, etc.)

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Items

Thumbnail Title Date Uploaded Visibility Actions
file details README.txt 2017-12-06 Public Download
file details Transcriptome.zip 2017-12-06 Public Download
file details Apocynaceae_gene_families.zip 2017-12-06 Public Download
file details Linkage_Analyses.zip 2017-12-06 Public Download
file details Genome_Data.zip 2017-12-19 Public Download