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Browsing Department of Botany and Plant Pathology by Title

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Browsing Department of Botany and Plant Pathology by Title

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  • McCune, Bruce; Schoch, Conrad; Root, Heather T.; Kageyama, Stacie A.; Miadlikowska, Jolanta (American Bryological and Lichenological Society, Inc., 2011)
    Hypogymnia imshaugii is one of the most common, conspicuous and morphologically variable epiphytic lichens of the Pacific coastal states and provinces. The species varies greatly in morphology and chemistry, suggesting m ...
  • O'Malley, Robert T.; Behrenfeld, Michael J.; Westberry, Toby K.; Milligan, Allen J.; Shang, Shaoling; Yan, Jing (American Geophysical Union, 2014-07-17)
    Since June 2010, the Geostationary Ocean Color Imager (GOCI) has been collecting the first diurnally resolved satellite ocean measurements. Here GOCI retrievals of phytoplankton chlorophyll concentration and fluorescen ...
  • Siegel, D. A.; Buesseler, K. O.; Doney, S. C.; Sailley, S. F.; Behrenfeld, M. J.; Boyd, P. W. (American Geophysical Union, 2014-03-10)
    The export of organic carbon from the surface ocean by sinking particles is an important, yet highly uncertain, component of the global carbon cycle. Here we introduce a mechanistic assessment of the global ocean carbo ...
  • Westberry, Toby K.; Williams, Peter J. le B.; Behrenfeld, Michael J. (American Geophysical Union, 2012-12-22)
    Reconciling rates of organic carbon export from the euphotic zone with the consumption of organic material in the dark ocean remains one of the major quantitative uncertainties of the ocean carbon cycle. Euphotic zone ne ...
  • Filichkin, Sergei A.; Breton, Ghislain; Priest, Henry D.; Dharmawardhana, Palitha; Jaiswal, Pankaj; Fox, Samuel E.; Michael, Todd P.; Chory, Joanne; Kay, Steve A.; Mockler, Todd C. (Public Library of Science, 2011-06-09)
    BACKGROUND: Circadian clocks provide an adaptive advantage through anticipation of daily and seasonal environmental changes. In plants, the central clock oscillator is regulated by several interlocking feedback loops. I ...
  • Monaco, Marcela K.; Stein, Joshua; Naithani, Sushma; Wei, Sharon; Dharmawardhana, Palitha; Kumari, Sunita; Amarasinghe, Vindhya; Youens-Clark, Ken; Thomason, James; Preece, Justin; Pasternak, Shiran; Olson, Andrew; Jiao, Yinping; Lu, Zhenyuan; Bolser, Dan; Kerhornou, Arnaud; Staines, Dan; Walts, Brandon; Wu, Guanming; D'Eustachio, Peter; Haw, Robin; Croft, David; Kersey, Paul J.; Stein, Lincoln; Jaiswal, Pankaj; Ware, Doreen (Oxford University Press, 2014-01-01)
    Gramene (http://www.gramene.org) is a curated online resource for comparative functional genomics in crops and model plant species, currently hosting 27 fully and 10 partially sequenced reference genomes in its build ...
  • Youens-Clark, Ken; Buckler, Ed; Casstevens, Terry; Dharmawardhana, Palitha; Jaiswal, Pankaj; et al. (Oxford University Press, 2010-11-13)
    Now in its 10th year, the Gramene database (http://www.gramene.org) has grown from its primary focus on rice, the first fully-sequenced grass genome, to become a resource for major model and crop plants including Arab ...
  • Ni, Junjian; Pujar, Anuradha; Youens-Clark, Ken; Jaiswal, Pankaj; et al. (Oxford University Press, 2009-05-08)
    Gramene is a comparative information resource for plants that integrates data across diverse data domains. In this article, we describe the development of a quantitative trait loci (QTL) database and illustrate how it c ...
  • Jaiswal, Pankaj; Ni, Junjian; Yap, Immanuel; et al. (Oxford University Press, 2006)
    Rice, maize, sorghum, wheat, barley and the other major crop grasses from the family Poaceae (Gramineae) are mankind’s most important source of calories and contribute tens of billions of dollars annually to the worl ...
  • Liang, Chengzhi; Jaiswal, Pankaj; Hebbard, Claire; et al. (Oxford University Press, 2007-11-04)
    Gramene (www.gramene.org) is a curated resource for genetic, genomic and comparative genomics data for the major crop species, including rice, maize, wheat and many other plant (mainly grass) species. Gramene is an o ...
  • Ware, Doreen; Jaiswal, Pankaj; Ni, Junjian; et al. (Oxford University Press, 2002-01-01)
    Gramene (http://www.gramene.org) is a comparative genome mapping database for grasses and a community resource for rice. Rice, in addition to being an economically important crop, is also a model monocot for understandin ...
  • Jaiswal, Pankaj; Ware, Doreen; Ni, Junjian; et al. (Hindawi Publishing Corporation, 2002-03-14)
    Gramene (http://www.gramene.org/) is a comparative genome database for cereal crops and a community resource for rice. We are populating and curating Gramene with annotated rice (Oryza sativa) genomic sequence data and ...
  • Maree, Hans J.; Almeida, Rodrigo P. P.; Bester, Rachelle; Chooi, Kar Mun; Cohen, Daniel; Dolja, Valerian V.; Fuchs, Marc F.; Golino, Deborah A.; Jooste, Anna E. C.; Martelli, Giovanni P.; Naidu, Rayapati A.; Rowhani, Adib; Saldarelli, Pasquale; Burger, Johan T. (Frontiers Research Foundation, 2013-04-16)
    Grapevine leafroll disease (GLD) is one of the most important grapevine viral diseases affecting grapevines worldwide. The impact on vine health, crop yield, and quality is difficult to assess due to a high number of var ...
  • Peck, JeriLynn E. (1996-04-29)
    With the increased recognition of moss as a secondary forest product has come an increased concern for the ecological ramifications of moss harvest. Three issues of primary concern are (1) characterizing the epiphyte com ...
  • Fahlgren, Noah; Howell, Miya D.; Kasschau, Kristin D.; Sullivan, Christopher M.; Cumbie, Jason S.; Givan, Scott A.; Law, Theresa F.; Grant, Sarah R.; Dangl, Jeffrey L.; Carrington, James C. (PLoS ONE, 2007-02)
    In plants, microRNAs (miRNAs) comprise one of two classes of small RNAs that function primarily as negative regulators at the posttranscriptional level. Several MIRNA genes in the plant kingdom are ancient, with conserv ...
  • Matsunaga, Kelly K. S.; Stockey, Ruth A.; Tomescu, Alexandru M. F. (Botanical Society of America, 2013-02)
    • Premise of the study: Colonists of even the most inhospitable environments, lichens are present in all terrestrial ecosystems. Because of their ecological versatility and ubiquity, they have been considered excellent ...
  • Bienapfl, John C. (2003-09-24)
    A necrosis at the tip of cones was observed on hop (Humulus lupulus), cultivar "Nugget", grown in Oregon in the early 1990's. Fusarium sambucinum and F. avenaceum were recovered from symptomatic cones in 1998 and preli ...
  • Straub, Shannon C. K.; Cronn, Richard C.; Edwards, Christopher; Fishbein, Mark; Liston, Aaron (Oxford University Press, 2013-09-12)
    Horizontal gene transfer (HGT) of DNA from the plastid to the nuclear and mitochondrial genomes of higher plants is a common phenomenon; however, plastid genomes (plastomes) are highly conserved and have generally been ...
  • Kepler, Ryan M.; Sung, Gi-Ho; Harada, Yukio; Tanaka, Kazuaki; Tanaka, Eiji; Hosoya, Tsuyoshi; Bischoff, Joseph F.; Spatafora, Joseph W. (Botanical Society of America, Inc., 2012-03)
    Premise of study: This research seeks to advance understanding of conditions allowing movement of fungal pathogens among hosts. The family Clavicipitaceae contains fungal pathogens exploiting hosts across three kingdoms ...
  • Zasada, Inga A.; Peetz, Amy; Wade, Nadine; Navarre, Roy A.; Ingham, Russ E. (The Society of Nematologists, 2013-09)
    Globodera ellingtonae was detected in Oregon in 2008. In order to make decisions regarding the regulation of this nematode, knowledge of its biology is required. We determined the host status of a diversity of potato (S ...

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