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Browsing Department of Botany and Plant Pathology by Author "Jaiswal, Pankaj"

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Browsing Department of Botany and Plant Pathology by Author "Jaiswal, Pankaj"

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  • Peremyslov, Valera V.; Mockler, Todd C.; Filichkin, Sergei A.; Fox, Samuel E.; Jaiswal, Pankaj; Makarova, Kira S.; Koonin, Eugene V.; Dolja, Valerian V. (American Society of Plant Biologists, 2011-03)
    Plants possess two myosin classes, VIII and XI. The myosins XI are implicated in organelle transport, filamentous actin organization, and cell and plant growth. Due to the large size of myosin gene families, knowledge o ...
  • Lens, Frederic; Cooper, Laurel; Gandolfo, Maria Alejandra; Groover, Andrew; Jaiswal, Pankaj; Lachenbruch, Barbara; Spicer, Rachel; Staton, Margaret E.; Stevenson, Dennis W.; Walls, Ramona L.; Wegrzyn, Jill (International Association of Wood Anatomists, 2012)
  • Gene Ontology Consortium; Berardini, Tanya Z.; Li, Donghui; Jaiswal, Pankaj; et al. (Oxford University Press, 2009-11-17)
    The Gene Ontology (GO) Consortium (http://www.geneontology.org) (GOC) continues to develop, maintain and use a set of structured, controlled vocabularies for the annotation of genes, gene products and sequences. The G ...
  • Bruskiewich, Richard; Senger, Martin; Davenport, Guy; Jaiswal, Pankaj; et al. (Hindawi Publishing Corporation, 2008)
    The Generation Challenge programme (GCP) is a global crop research consortium directed toward crop improvement through the application of comparative biology and genetic resources characterization to plant breeding. A k ...
  • Bushley, Kathryn E.; Raja, Rajani; Jaiswal, Pankaj; Cumbie, Jason S.; Nonogaki, Mariko; Boyd, Alexander E.; Owensby, C. Alisha; Knaus, Brian J.; Elser, Justin; Miller, Daniel; Di, Yanming; McPhail, Kerry L.; Spatafora, Joseph W. (Public Library of Science, 2013-06-20)
    The ascomycete fungus Tolypocladium inflatum, a pathogen of beetle larvae, is best known as the producer of the immunosuppressant drug cyclosporin. The draft genome of T. inflatum strain NRRL 8044 (ATCC 34921), the isola ...
  • Dharmawardhana, Palitha; Ren, Liya; Amarasinghe, Vindhya; Monaco, Marcela; Thomason, Jim; Ravenscroft, Dean; McCouch, Susan; Ware, Doreen; Jaiswal, Pankaj (Springer, 2013)
    Background: Functional annotations of large plant genome projects mostly provide information on gene function and gene families based on the presence of protein domains and gene homology, but not necessarily in associa ...
  • Filichkin, Sergei A.; Breton, Ghislain; Priest, Henry D.; Dharmawardhana, Palitha; Jaiswal, Pankaj; Fox, Samuel E.; Michael, Todd P.; Chory, Joanne; Kay, Steve A.; Mockler, Todd C. (Public Library of Science, 2011-06-09)
    BACKGROUND: Circadian clocks provide an adaptive advantage through anticipation of daily and seasonal environmental changes. In plants, the central clock oscillator is regulated by several interlocking feedback loops. I ...
  • Monaco, Marcela K.; Stein, Joshua; Naithani, Sushma; Wei, Sharon; Dharmawardhana, Palitha; Kumari, Sunita; Amarasinghe, Vindhya; Youens-Clark, Ken; Thomason, James; Preece, Justin; Pasternak, Shiran; Olson, Andrew; Jiao, Yinping; Lu, Zhenyuan; Bolser, Dan; Kerhornou, Arnaud; Staines, Dan; Walts, Brandon; Wu, Guanming; D'Eustachio, Peter; Haw, Robin; Croft, David; Kersey, Paul J.; Stein, Lincoln; Jaiswal, Pankaj; Ware, Doreen (Oxford University Press, 2014-01-01)
    Gramene (http://www.gramene.org) is a curated online resource for comparative functional genomics in crops and model plant species, currently hosting 27 fully and 10 partially sequenced reference genomes in its build ...
  • Youens-Clark, Ken; Buckler, Ed; Casstevens, Terry; Dharmawardhana, Palitha; Jaiswal, Pankaj; et al. (Oxford University Press, 2010-11-13)
    Now in its 10th year, the Gramene database (http://www.gramene.org) has grown from its primary focus on rice, the first fully-sequenced grass genome, to become a resource for major model and crop plants including Arab ...
  • Ni, Junjian; Pujar, Anuradha; Youens-Clark, Ken; Jaiswal, Pankaj; et al. (Oxford University Press, 2009-05-08)
    Gramene is a comparative information resource for plants that integrates data across diverse data domains. In this article, we describe the development of a quantitative trait loci (QTL) database and illustrate how it c ...
  • Jaiswal, Pankaj; Ni, Junjian; Yap, Immanuel; et al. (Oxford University Press, 2006)
    Rice, maize, sorghum, wheat, barley and the other major crop grasses from the family Poaceae (Gramineae) are mankind’s most important source of calories and contribute tens of billions of dollars annually to the worl ...
  • Liang, Chengzhi; Jaiswal, Pankaj; Hebbard, Claire; et al. (Oxford University Press, 2007-11-04)
    Gramene (www.gramene.org) is a curated resource for genetic, genomic and comparative genomics data for the major crop species, including rice, maize, wheat and many other plant (mainly grass) species. Gramene is an o ...
  • Ware, Doreen; Jaiswal, Pankaj; Ni, Junjian; et al. (Oxford University Press, 2002-01-01)
    Gramene (http://www.gramene.org) is a comparative genome mapping database for grasses and a community resource for rice. Rice, in addition to being an economically important crop, is also a model monocot for understandin ...
  • Jaiswal, Pankaj; Ware, Doreen; Ni, Junjian; et al. (Hindawi Publishing Corporation, 2002-03-14)
    Gramene (http://www.gramene.org/) is a comparative genome database for cereal crops and a community resource for rice. We are populating and curating Gramene with annotated rice (Oryza sativa) genomic sequence data and ...
  • Monaco, Marcela K.; Sen, Taner Z.; Dharmawardhana, Palitha D.; Ren, Liya; Schaeffer, Mary; Naithani, Sushma; Amarasinghe, Vindhya; Thomason, Jim; Harper, Lisa; Gardiner, Jack; Cannon, Ethalinda K.S.; Lawrence, Carolyn J.; Ware, Doreen; Jaiswal, Pankaj (Crop Science Society of America, 2013-03)
    A framework for understanding the synthesis and catalysis of metabolites and other biochemicals by proteins is crucial for unraveling the physiology of cells. To create such a framework for Zea mays L. subsp. mays (maize ...
  • Shen, Qingxi J.; Yu, Diqiu; Jeon, Jong-Seong; Piffanelli, Pietro; Abbruscato, Pamela; Guo, Ze-Jian; Zhang, Yuanji; Itoh, Takeshi; Lee, Sung S.; Buell, C. Robin; Nagato, Yasuo; McCouch, Susan; Yano, Masahiro; Wang, Guo-liang; Jena, Kshirod K.; Xiong, Lizhong; Meyers, Blake; Jaiswal, Pankaj; Yamazaki, Yukiko (Springer, 2012-02-27)
    Background: Since whole genome sequences of rice were made publically accessible, the number of articles on new rice genes has increased remarkably. The Committee on Gene Symbolization, Nomenclature and Linkage (CGSNL) o ...
  • Walls, Ramona L.; Athreya, Balaji; Cooper, Laurel; Elser, Justin; Gandolfo, Maria A.; Jaiswal, Pankaj; Mungall, Christopher J.; Preece, Justin; Rensing, Stefan; Smith, Barry; Stevenson, Dennis W. (Botanical Society of America, 2012-08)
    Premise of the study: Bio-ontologies are essential tools for accessing and analyzing the rapidly growing pool of plant genomic and phenomic data. Ontologies provide structured vocabularies to support consistent aggregati ...
  • Jaiswal, Pankaj; Avraham, Shulamit; Ilic, Katica; et al. (Hindawi Publishing Corporation, 2005-10)
    The Plant Ontology Consortium (POC) (www.plantontology.org) is a collaborative effort among several plant databases and experts in plant systematics, botany and genomics. A primary goal of the POC is to develop simple ...
  • Cooper, Laurel; Walls, Ramona L.; Elser, Justin; Gandolfo, Maria A.; Stevenson, Dennis W.; Smith, Barry; Preece, Justin; Athreya, Balaji; Mungall, Christopher J.; Rensing, Stefan; Hiss, Manuel; Lang, Daniel; Reski, Ralf; Berardini, Tanya Z.; Li, Donghui; Huala, Eva; Schaeffer, Mary; Menda, Naama; Arnaud, Elizabeth; Shrestha, Rosemary; Yamazaki, Yukiko; Jaiswal, Pankaj (Oxford University Press on behalf of Japanese Society of Plant Physiologists, 2013-02)
    The Plant Ontology (PO;http://www.plantontology.org/" is a publicly available, collaborative effort to develop and maintain a controlled, structured vocabulary ('ontology') of terms to describe plant anatomy, morphology ...
  • Avraham, Shulamit; Tung, Chih-Wei; Ilic, Katica; Jaiswal, Pankaj; et al. (Oxford University Press, 2008)
    The Plant Ontology Consortium (POC, http://www.plantontology.org) is a collaborative effort among model plant genome databases and plant researchers that aims to create, maintain and facilitate the use of a controlled ...

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