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Browsing Faculty Research Publications (Botany and Plant Pathology) by Title

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Browsing Faculty Research Publications (Botany and Plant Pathology) by Title

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  • Turechek, W. W.; Madden, L. V.; Gent, D. H. (American Phytopathological Society, 2011-12)
    The binary power law (BPL) has been successfully used to characterize heterogeneity (overdispersion or small-scale aggregation) of disease incidence for many plant pathosystems. With the BPL, the log of the observed vari ...
  • Li, Chuan; Rudi, Heidi; Stockinger, Eric J.; Cheng, Hongmei; Cao, Moju; Fox, Samuel E.; Mockler, Todd C.; Westereng, Bjorge; Fjellheim, Siri; Robnli, Odd Arne; Sandve, Simen R. (BioMed Central Ltd., 2012-05-08)
    Background: Little is known about the potential of Brachypodium distachyon as a model for low temperature stress responses in Pooideae. The ice recrystallization inhibition protein (IRIP) genes, fructosyltransferase (FS ...
  • Ceron-Souza, Ivania; Bermingham, Eldredge; McMillan, William Owen; Jones, Frank Andrew (BioMed Central Ltd., 2012-10-18)
    Background: Mangroves are ecologically important and highly threatened forest communities. Observational and genetic evidence has confirmed the long distance dispersal capacity of water-dispersed mangrove seeds, but less ...
  • Condon, Bradford J.; Leng, Yueqiang; Wu, Dongliang; Bushley, Kathryn E.; Ohm, Robin A.; Otillar, Robert; Martin, Joel; Schackwitz, Wendy; Grimwood, Jane; MohdZainudin, NurAinIzzati; Xue, Chunsheng; Wang, Rui; Manning, Viola A.; Dhillon, Braham; Tu, Zheng Jin; Steffenson, Brian J.; Salamov, Asaf; Sun, Hui; Lowry, Steve; LaButti, Kurt; Han, James; Copeland, Alex; Lindquist, Erika; Barry, Kerrie; Schmutz, Jeremy; Baker, Scott E.; Ciuffetti, Lynda M.; Grigoriev, Igor V.; Zhong, Shaobin; Turgeon, B. Gillian (Public Library of Science, 2013-01-24)
    The genomes of five Cochliobolus heterostrophus strains, two Cochliobolus sativus strains, three additional Cochliobolus species (Cochliobolus victoriae, Cochliobolus carbonum, Cochliobolus miyabeanus), and closely relat ...
  • Manning, Viola A.; Pandelova, Iovanna; Dhillon, Braham; Wilhelm, Larry J.; Goodwin, Stephen B.; Berlin, Aaron M.; Figueroa, Melania; Freitag, Michael; Hane, James K.; Henrissat, Bernard; Holman, Wade H.; Kodira, Chinnappa D.; Martin, Joel; Oliver, Richard P.; Robbertse, Barbara; Schackwitz, Wendy; Schwartz, David C.; Spatafora, Joseph W.; Turgeon, B. Gillian; Yandava, Chandri; Young, Sarah; Zhou, Shiguo; Zeng, Qiandong; Grigoriev, Igor V.; Ma, Li-Jun; Ciuffetti, Lynda M. (The Genetics Society of America, 2013-01)
    Pyrenophora tritici-repentis is a necrotrophic fungus causal to the disease tan spot of wheat, whose contribution to crop loss has increased significantly during the last few decades. Pathogenicity by this fungus is attr ...
  • Loper, Joyce E.; Hassan, Karl A.; Mavrodi, Dmitri V.; Davis, Edward W. II; Lim, Chee Kent; Shaffer, Brenda T.; Elbourne, Liam D. H.; Stockwell, Virginia O.; Hartney, Sierra L.; Breakwell, Katy; Henkels, Marcella D.; Tetu, Sasha G.; Rangel, Lorena I.; Kidarsa, Teresa A.; Wilson, Neil L.; van de Mortel, Judith E.; Song, Chunxu; Blumhagen, Rachel; Radune, Diana; Hostetler, Jessica B.; Brinkac, Lauren M.; Durkin, A. Scott; Kluepfel, Daniel A.; Wechter, W. Patrick; Anderson, Anne J.; Kim, Young Cheol; Pierson, Leland S. III; Pierson, Elizabeth A.; Lindow, Steven E.; Kobayashi, Donald Y.; Raaijmakers, Jos M.; Weller, David M.; Thomashow, Linda S.; Allen, Andrew E.; Paulsen, Ian T. (Public Library of Science, 2012-07-05)
    We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological contr ...
  • Loper, Joyce E.; Hassan, Karl A.; Mavrodi, Dmitri V.; Davis, Edward W., II; Lim, Chee Kent; Shaffer, Brenda T.; Elbourne, Liam D. H.; Stockwell, Virginia O.; Hartney, Sierra L.; Breakwell, Katy; Henkels, Marcella D.; Tetu, Sasha G.; Rangel, Lorena I.; Kidarsa, Teresa A.; Wilson, Neil L.; van de Mortel, Judith E.; Song, Chunxu; Blumhagen, Rachel; Radune, Diana; Hostetler, Jessica B.; Brinkac, Lauren M.; Durkin, A. Scott; Kluepfel, Daniel A.; Wechter, W. Patrick; Anderson, Anne J.; Kim, Young Cheol; Pierson, Leland S., III; Pierson, Elizabeth A.; Lindow, Steven E.; Kobayashi, Donald Y.; Raaijmakers, Jos M.; Weller, David M.; Thomashow, Linda S.; Allen, Andrew E.; Paulsen, Ian T. (Public Library of science, 2012-07)
    We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological contr ...
  • Kroese, Duncan; Zasada, Inga A.; Ingham, Russell E. (The Society of Nematologists, 2011-09)
    Laboratory-based methods to test egg viability include staining with Meldola's Blue and/or juvenile (J2) hatching assays using potato root diffusate (PRD). These two methods have not been tested under identical condition ...
  • Li, Xiao Hua; Carrington, James C. (National Academy of Sciences, 1995-01)
    A genetic complementation system was developed in which tobacco etch virus (TEV) polymerase (NIb)- expressing transgenic plants or protoplasts were inoculated with NIb-defective TEV mutants. A β-glucuronidase (GUS) r ...
  • Fahlgren, Noah; Sullivan, Christopher M.; Kasschau, Krisitin D.; Chapman, Elisabeth J.; Cumbie, Jason S.; Montgomery, Taiowa A.; Gilbert, Sunny D.; Dasenko, Mark; Backman, Tyler W. H.; Givan, Scott A.; Carrington, James C. (Cold Spring Harbor Laboratory Press, 2009-05)
    The advent of high-throughput sequencing (HTS) methods has enabled direct approaches to quantitatively profile small RNA populations. However, these methods have been limited by several factors, including representation ...
  • Sherman, Jennifer; Gent, David H. (American Phytopathological Society, 2014-08)
    See article for Abstract.
  • Gent, D. H.; Grove, G. G.; Nelson, M. E.; Wolfenbarger, S. N.; Woods, J. L. (John Wiley & Sons Ltd., 2014-06)
    Powdery mildew of hop (Podosphaera macularis) may cause economic loss due to reductions in cone yield and quality. Quantitative estimates of crop damage from powdery mildew remain poorly characterized, especially the ef ...
  • Goyer, Aymeric; Hasnain, Ghulam; Frelin, Oceane; Ralat, Maria A.; Gregory, Jesse F., III; Hanson, Andrew D. (Portland Press, 2013-09-15)
    Genes specifying the thiamin monophosphate phosphatase and adenylated thiazole diphosphatase steps in fungal and plant thiamin biosynthesis remain unknown, as do genes for thiamin diphosphate (ThDP) hydrolysis in thiam ...
  • Starkenburg, Shawn R.; Arp, Daniel J.; Bottomley, Peter J. (Society for General Microbiology, 2008)
    Nitrobacter hamburgensis X14 is a facultative lithoautotroph that conserves energy from the oxidation of nitrite (NO 2 ) and fixes carbon dioxide (CO2) as its sole source of carbon. The availability of the N. hamburg ...
  • Verchot, Jeanmarie; Carrington, James C. (American Society of Microbiology, 1995-03)
    Tobacco etch virus (TEV) encodes three proteinases that catalyze processing of the genome-encoded polyprotein. The P1 proteinase originates from the N terminus of the polyprotein and catalyzes proteolysis between itsel ...
  • Nelson, Peter R.; Roland, Carl; Macander, Matthew J.; McCune, Bruce (Elsevier, 2013-06-29)
    Spatial variation of available food resources can be difficult to accurately quantify for wide ranging organisms at landscape scales. Lichens with usnic acid, a yellowish pigment, constitute a large portion of caribou w ...
  • Estep, Laura K.; McClure, Christopher J. W.; Burkett-Cadena, Nathan D.; Hassan, Hassan K.; Unnasch, Thomas R.; Hill, Geoffrey E. (Entomological Society of America, 2012)
    Studies of mosquito preferences for avian hosts have found that some bird species are at greater risk than others of being fed upon by mosquitoes. The ecological factors that determine this interspecific variation in avi ...
  • Verde, Ignazio; Bassil, Nahla; Scalabrin, Simone; Gilmore, Barbara; Lawley, Cynthia T.; Gasic, Ksenija; Micheletti, Diego; Rosyara, Umesh R.; Cattonaro, Federica; Vendramin, Elisa; Main, Dorrie; Aramini, Valeria; Blas, Andrea L.; Mockler, Todd C.; Bryant, Douglas W.; Wilhelm, Larry; Troggio, Michela; Sosinski, Bryon; Jose Aranzana, Maria; Arus, Pere; Iezzoni, Amy; Morgante, Michele; Peace, Cameron (Public Library of Science, 2012-04-20)
    Although a large number of single nucleotide polymorphism (SNP) markers covering the entire genome are needed to enable molecular breeding efforts such as genome wide association studies, fine mapping, genomic selection ...
  • Vukašinović, Nemanja; Cvrčková, Fatima; Eliáš, Marek; Cole, Rex A.; Fowler, John E.; et al. (Public Library of Science, 2014-04-11)
    Repetitive sequences present a challenge for genome sequence assembly, and highly similar segmental duplications may disappear from assembled genome sequences. Having found a surprising lack of observable phenotypic dev ...
  • Gu, Weifeng; Shirayama, Masaki; Conte Jr., Darryl; Vasale, Jessica; Batista, Pedro J.; Claycomb, Julie M.; Moresco, James J.; Youngman, Elaine; Keys, Jennifer; Stoltz, Matthew J.; Chen, Chun-Cheih G.; Chaves, Daniel A.; Duan, Shenghua E.; Kasschau, Krisitin D.; Fahlgren, Noah; Yates III, John R.; Mitani, Shohei; Carrington, James C.; Mello, Craig C. (Elsevier Inc., 2010-10-23)
    Endogenous small RNAs (endo-siRNAs) interact with Argonaute (AGO) proteins to mediate sequence-specific regulation of diverse biological processes. Here, we combine deep-sequencing and genetic approaches to explore the ...

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