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Browsing Faculty Research Publications (Botany and Plant Pathology) by Title

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Browsing Faculty Research Publications (Botany and Plant Pathology) by Title

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  • Pearse, William D.; Jones, F. Andrew; Purvis, Andy (Ecological Society of America, 2013-12)
    Phylogenetic analyses of assemblage membership provide insight into how ecological communities are structured. However, despite the scale-dependency of many ecological processes, little is known about how assemblage an ...
  • Salamone, Isabella; Govindarajulu, Rajanikanth; Falk, Stacey; Parks, Matthew; Liston, Aaron; Ashnam, Tia-Lynn (Botanical Society of America, 2013-05)
    Premise of the Study: Hybrid zones provide "natural laboratories" for understanding the processes of selection, reinforcement, and speciation. We sought to gain insight into the degree of introgression and the extent of ...
  • Meyers, Stephen; Liston, Aaron (University of Chicago Press, 2008-09)
    Plantago ovata Forssk. (Plantaginaceae) is a species that, in North America, inhabits desert and Mediterranean habitats of the southwest United States, northwest Mexico, and the Channel Islands of California and Mexico. ...
  • Wijayratne, Upekala C.; Pyke, David A. (Botanical Society of America, 2012-03)
    • Premise of the study: Seed longevity and persistence in soil seed banks may be especially important for population persistence in ecosystems where opportunities for seedling establishment and disturbance are unpredicta ...
  • Zhalnina, Kateryna; de Quadros, Patricia D.; Gano, Kelsey A.; Davis-Richardson, Austin; Fagen, Jennie R.; Brown, Christopher T.; Giongo, Adriana; Drew, Jennifer C.; Sayavedra-Soto, Luis A.; Arp, Dan J.; Camargo, Flavio A. O.; Daroub, Samira H.; Clark, Ian M.; McGrath, Steve P.; Hirsch, Penny R.; Triplett, Eric W. (Frontiers Research Foundation, 2013-05-01)
    Agricultural land management, such as fertilization, liming, and tillage affects soil properties, including pH, organic matter content, nitrification rates, and the microbial community. Three different study sites were u ...
  • Carrington, James C.; Freed, Deon D. (American Society of Microbiology, 1990-04)
    The RNA genome of tobacco etch virus (TEV), a plant potyvirus, functions as an mRNA for synthesis of a 346-kilodalton polyprotein that undergoes extensive proteolytic processing. The RNA lacks a normal 5' cap structure ...
  • Hyman, Michael R.; Ensign, Scott A.; Arp, Daniel J.; Ludden, Paul W. (American Chemical Society, 1989)
    Carbonyl sulfide (COS) has been investigated as a rapid-equilibrium inhibitor of CO oxidation by the CO dehydrogenase purified from Rhodospirillum rubrum. The kinetic evidence suggests that the inhibition by COS is lar ...
  • Haddadi, Fatima; Mokabli, Aissa; Smiley, Richard W. (Springer, 2013-09)
    Heterodera avenae is widely distributed in areas where most cereal crops are produced in Algeria. However, the virulence of the Algerian populations of this nematode on individual cereal species and cultivars has not bee ...
  • Asmussen, Conny B.; Liston, Aaron (Botanical Society of America, Inc., 1998-03)
    Mapped cpDNA restriction site characters were analyzed cladistically and the resulting phylogenetic hypotheses were used to test monophyly and relationships of the infrageneric classification of Lathyrus (Fabaceae) prop ...
  • Dolja, Valerian V.; Koonin, Eugene V. (Frontiers Research Foundation, 2013-04-11)
    Important progress in understanding replication, interactions with host plants, and evolution of closteroviruses enabled engineering of several vectors for gene expression and virus-induced gene silencing. Due to the bro ...
  • Turechek, W. W.; Madden, L. V.; Gent, D. H. (American Phytopathological Society, 2011-12)
    The binary power law (BPL) has been successfully used to characterize heterogeneity (overdispersion or small-scale aggregation) of disease incidence for many plant pathosystems. With the BPL, the log of the observed vari ...
  • Li, Chuan; Rudi, Heidi; Stockinger, Eric J.; Cheng, Hongmei; Cao, Moju; Fox, Samuel E.; Mockler, Todd C.; Westereng, Bjorge; Fjellheim, Siri; Robnli, Odd Arne; Sandve, Simen R. (BioMed Central Ltd., 2012-05-08)
    Background: Little is known about the potential of Brachypodium distachyon as a model for low temperature stress responses in Pooideae. The ice recrystallization inhibition protein (IRIP) genes, fructosyltransferase (FS ...
  • Ceron-Souza, Ivania; Bermingham, Eldredge; McMillan, William Owen; Jones, Frank Andrew (BioMed Central Ltd., 2012-10-18)
    Background: Mangroves are ecologically important and highly threatened forest communities. Observational and genetic evidence has confirmed the long distance dispersal capacity of water-dispersed mangrove seeds, but less ...
  • Condon, Bradford J.; Leng, Yueqiang; Wu, Dongliang; Bushley, Kathryn E.; Ohm, Robin A.; Otillar, Robert; Martin, Joel; Schackwitz, Wendy; Grimwood, Jane; MohdZainudin, NurAinIzzati; Xue, Chunsheng; Wang, Rui; Manning, Viola A.; Dhillon, Braham; Tu, Zheng Jin; Steffenson, Brian J.; Salamov, Asaf; Sun, Hui; Lowry, Steve; LaButti, Kurt; Han, James; Copeland, Alex; Lindquist, Erika; Barry, Kerrie; Schmutz, Jeremy; Baker, Scott E.; Ciuffetti, Lynda M.; Grigoriev, Igor V.; Zhong, Shaobin; Turgeon, B. Gillian (Public Library of Science, 2013-01-24)
    The genomes of five Cochliobolus heterostrophus strains, two Cochliobolus sativus strains, three additional Cochliobolus species (Cochliobolus victoriae, Cochliobolus carbonum, Cochliobolus miyabeanus), and closely relat ...
  • Manning, Viola A.; Pandelova, Iovanna; Dhillon, Braham; Wilhelm, Larry J.; Goodwin, Stephen B.; Berlin, Aaron M.; Figueroa, Melania; Freitag, Michael; Hane, James K.; Henrissat, Bernard; Holman, Wade H.; Kodira, Chinnappa D.; Martin, Joel; Oliver, Richard P.; Robbertse, Barbara; Schackwitz, Wendy; Schwartz, David C.; Spatafora, Joseph W.; Turgeon, B. Gillian; Yandava, Chandri; Young, Sarah; Zhou, Shiguo; Zeng, Qiandong; Grigoriev, Igor V.; Ma, Li-Jun; Ciuffetti, Lynda M. (The Genetics Society of America, 2013-01)
    Pyrenophora tritici-repentis is a necrotrophic fungus causal to the disease tan spot of wheat, whose contribution to crop loss has increased significantly during the last few decades. Pathogenicity by this fungus is attr ...
  • Loper, Joyce E.; Hassan, Karl A.; Mavrodi, Dmitri V.; Davis, Edward W. II; Lim, Chee Kent; Shaffer, Brenda T.; Elbourne, Liam D. H.; Stockwell, Virginia O.; Hartney, Sierra L.; Breakwell, Katy; Henkels, Marcella D.; Tetu, Sasha G.; Rangel, Lorena I.; Kidarsa, Teresa A.; Wilson, Neil L.; van de Mortel, Judith E.; Song, Chunxu; Blumhagen, Rachel; Radune, Diana; Hostetler, Jessica B.; Brinkac, Lauren M.; Durkin, A. Scott; Kluepfel, Daniel A.; Wechter, W. Patrick; Anderson, Anne J.; Kim, Young Cheol; Pierson, Leland S. III; Pierson, Elizabeth A.; Lindow, Steven E.; Kobayashi, Donald Y.; Raaijmakers, Jos M.; Weller, David M.; Thomashow, Linda S.; Allen, Andrew E.; Paulsen, Ian T. (Public Library of Science, 2012-07-05)
    We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological contr ...
  • Loper, Joyce E.; Hassan, Karl A.; Mavrodi, Dmitri V.; Davis, Edward W., II; Lim, Chee Kent; Shaffer, Brenda T.; Elbourne, Liam D. H.; Stockwell, Virginia O.; Hartney, Sierra L.; Breakwell, Katy; Henkels, Marcella D.; Tetu, Sasha G.; Rangel, Lorena I.; Kidarsa, Teresa A.; Wilson, Neil L.; van de Mortel, Judith E.; Song, Chunxu; Blumhagen, Rachel; Radune, Diana; Hostetler, Jessica B.; Brinkac, Lauren M.; Durkin, A. Scott; Kluepfel, Daniel A.; Wechter, W. Patrick; Anderson, Anne J.; Kim, Young Cheol; Pierson, Leland S., III; Pierson, Elizabeth A.; Lindow, Steven E.; Kobayashi, Donald Y.; Raaijmakers, Jos M.; Weller, David M.; Thomashow, Linda S.; Allen, Andrew E.; Paulsen, Ian T. (Public Library of science, 2012-07)
    We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological contr ...
  • Kroese, Duncan; Zasada, Inga A.; Ingham, Russell E. (The Society of Nematologists, 2011-09)
    Laboratory-based methods to test egg viability include staining with Meldola's Blue and/or juvenile (J2) hatching assays using potato root diffusate (PRD). These two methods have not been tested under identical condition ...
  • Li, Xiao Hua; Carrington, James C. (National Academy of Sciences, 1995-01)
    A genetic complementation system was developed in which tobacco etch virus (TEV) polymerase (NIb)- expressing transgenic plants or protoplasts were inoculated with NIb-defective TEV mutants. A β-glucuronidase (GUS) r ...
  • Fahlgren, Noah; Sullivan, Christopher M.; Kasschau, Krisitin D.; Chapman, Elisabeth J.; Cumbie, Jason S.; Montgomery, Taiowa A.; Gilbert, Sunny D.; Dasenko, Mark; Backman, Tyler W. H.; Givan, Scott A.; Carrington, James C. (Cold Spring Harbor Laboratory Press, 2009-05)
    The advent of high-throughput sequencing (HTS) methods has enabled direct approaches to quantitatively profile small RNA populations. However, these methods have been limited by several factors, including representation ...

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