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Browsing Faculty Research Publications (Botany and Plant Pathology) by Title

Browsing Faculty Research Publications (Botany and Plant Pathology) by Title

Now showing items 9-28 of 124

Cap-Independent Enhancement of Translation by a Plant Potyvirus 5' Nontranslated Region

Carrington, James C.; Freed, Deon D. (American Society of Microbiology, 1990-04)

The RNA genome of tobacco etch virus (TEV), a plant potyvirus, functions as an mRNA for synthesis of a 346-kilodalton polyprotein that undergoes extensive proteolytic processing. The RNA lacks a normal 5' cap structure ...
Carbonyl Sulfide Inhibition of CO Dehydrogenase from Rhodospirillum rubrum

Hyman, Michael R.; Ensign, Scott A.; Arp, Daniel J.; Ludden, Paul W. (American Chemical Society, 1989)

Carbonyl sulfide (COS) has been investigated as a rapid-equilibrium inhibitor of CO oxidation by the CO dehydrogenase purified from Rhodospirillum rubrum. The kinetic evidence suggests that the inhibition by COS is lar ...
Chloroplast DNA characters, phylogeny, and classification of Lathyrus (Fabaceae)

Asmussen, Conny B.; Liston, Aaron (Botanical Society of America, Inc., 1998-03)

Mapped cpDNA restriction site characters were analyzed cladistically and the resulting phylogenetic hypotheses were used to test monophyly and relationships of the infrageneric classification of Lathyrus (Fabaceae) prop ...
Comments Regarding the Binary Power Law for Heterogeneity of Disease Incidence

Turechek, W. W.; Madden, L. V.; Gent, D. H. (American Phytopathological Society, 2011-12)

The binary power law (BPL) has been successfully used to characterize heterogeneity (overdispersion or small-scale aggregation) of disease incidence for many plant pathosystems. With the BPL, the log of the observed vari ...
Comparative analyses reveal potential uses of Brachypodium distachyon as a model for cold stress responses in temperate grasses

Li, Chuan; Rudi, Heidi; Stockinger, Eric J.; Cheng, Hongmei; Cao, Moju; Fox, Samuel E.; Mockler, Todd C.; Westereng, Bjorge; Fjellheim, Siri; Robnli, Odd Arne; Sandve, Simen R. (BioMed Central Ltd., 2012-05-08)

Background: Little is known about the potential of Brachypodium distachyon as a model for low temperature stress responses in Pooideae. The ice recrystallization inhibition protein (IRIP) genes, fructosyltransferase (FS ...
Comparative genetic structure of two mangrove species in Caribbean and Pacific estuaries of Panama

Ceron-Souza, Ivania; Bermingham, Eldredge; McMillan, William Owen; Jones, Frank Andrew (BioMed Central Ltd., 2012-10-18)

Background: Mangroves are ecologically important and highly threatened forest communities. Observational and genetic evidence has confirmed the long distance dispersal capacity of water-dispersed mangrove seeds, but less ...
Comparative Genome Structure, Secondary Metabolite, and Effector Coding Capacity across Cochliobolus Pathogens

Condon, Bradford J.; Leng, Yueqiang; Wu, Dongliang; Bushley, Kathryn E.; Ohm, Robin A.; Otillar, Robert; Martin, Joel; Schackwitz, Wendy; Grimwood, Jane; MohdZainudin, NurAinIzzati; Xue, Chunsheng; Wang, Rui; Manning, Viola A.; Dhillon, Braham; Tu, Zheng Jin; Steffenson, Brian J.; Salamov, Asaf; Sun, Hui; Lowry, Steve; LaButti, Kurt; Han, James; Copeland, Alex; Lindquist, Erika; Barry, Kerrie; Schmutz, Jeremy; Baker, Scott E.; Ciuffetti, Lynda M.; Grigoriev, Igor V.; Zhong, Shaobin; Turgeon, B. Gillian (Public Library of Science, 2013-01-24)

The genomes of five Cochliobolus heterostrophus strains, two Cochliobolus sativus strains, three additional Cochliobolus species (Cochliobolus victoriae, Cochliobolus carbonum, Cochliobolus miyabeanus), and closely relat ...
Comparative Genomics of a Plant-Pathogenic Fungus, Pyrenophora tritici-repentis, Reveals Transduplication and the Impact of Repeat Elements on Pathogenicity and Population Divergence

Manning, Viola A.; Pandelova, Iovanna; Dhillon, Braham; Wilhelm, Larry J.; Goodwin, Stephen B.; Berlin, Aaron M.; Figueroa, Melania; Freitag, Michael; Hane, James K.; Henrissat, Bernard; Holman, Wade H.; Kodira, Chinnappa D.; Martin, Joel; Oliver, Richard P.; Robbertse, Barbara; Schackwitz, Wendy; Schwartz, David C.; Spatafora, Joseph W.; Turgeon, B. Gillian; Yandava, Chandri; Young, Sarah; Zhou, Shiguo; Zeng, Qiandong; Grigoriev, Igor V.; Ma, Li-Jun; Ciuffetti, Lynda M. (The Genetics Society of America, 2013-01)

Pyrenophora tritici-repentis is a necrotrophic fungus causal to the disease tan spot of wheat, whose contribution to crop loss has increased significantly during the last few decades. Pathogenicity by this fungus is attr ...
Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Loper, Joyce E.; Hassan, Karl A.; Mavrodi, Dmitri V.; Davis, Edward W., II; Lim, Chee Kent; Shaffer, Brenda T.; Elbourne, Liam D. H.; Stockwell, Virginia O.; Hartney, Sierra L.; Breakwell, Katy; Henkels, Marcella D.; Tetu, Sasha G.; Rangel, Lorena I.; Kidarsa, Teresa A.; Wilson, Neil L.; van de Mortel, Judith E.; Song, Chunxu; Blumhagen, Rachel; Radune, Diana; Hostetler, Jessica B.; Brinkac, Lauren M.; Durkin, A. Scott; Kluepfel, Daniel A.; Wechter, W. Patrick; Anderson, Anne J.; Kim, Young Cheol; Pierson, Leland S., III; Pierson, Elizabeth A.; Lindow, Steven E.; Kobayashi, Donald Y.; Raaijmakers, Jos M.; Weller, David M.; Thomashow, Linda S.; Allen, Andrew E.; Paulsen, Ian T. (Public Library of science, 2012-07)

We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological contr ...
Comparison of Meldola’s Blue Staining and Hatching Assay with Potato Root Diffusate for Assessment of Globodera sp. Egg Viability

Kroese, Duncan; Zasada, Inga A.; Ingham, Russell E. (The Society of Nematologists, 2011-09)

Laboratory-based methods to test egg viability include staining with Meldola's Blue and/or juvenile (J2) hatching assays using potato root diffusate (PRD). These two methods have not been tested under identical condition ...
Complementation of tobacco etch potyvirus mutants by active RNA polymerase expressed in transgenic cells

Li, Xiao Hua; Carrington, James C. (National Academy of Sciences, 1995-01)

A genetic complementation system was developed in which tobacco etch virus (TEV) polymerase (NIb)- expressing transgenic plants or protoplasts were inoculated with NIb-defective TEV mutants. A β-glucuronidase (GUS) r ...
Computational and analytical framework for small RNA profiling by high-throughput sequencing

Fahlgren, Noah; Sullivan, Christopher M.; Kasschau, Krisitin D.; Chapman, Elisabeth J.; Cumbie, Jason S.; Montgomery, Taiowa A.; Gilbert, Sunny D.; Dasenko, Mark; Backman, Tyler W. H.; Givan, Scott A.; Carrington, James C. (Cold Spring Harbor Laboratory Press, 2009-05)

The advent of high-throughput sequencing (HTS) methods has enabled direct approaches to quantitatively profile small RNA populations. However, these methods have been limited by several factors, including representation ...
D-Lactate metabolism and the obligate requirement for CO2 during growth on nitrite by the facultative lithoautotroph Nitrobacter hamburgensis

Starkenburg, Shawn R.; Arp, Daniel J.; Bottomley, Peter J. (Society for General Microbiology, 2008)

Nitrobacter hamburgensis X14 is a facultative lithoautotroph that conserves energy from the oxidation of nitrite (NO 2 ) and fixes carbon dioxide (CO2) as its sole source of carbon. The availability of the N. hamburg ...
Debilitation of Plant Potyvirus Infectivity by P1 Proteinase-Inactivating Mutations and Restoration by Second-Site Modifications

Verchot, Jeanmarie; Carrington, James C. (American Society of Microbiology, 1995-03)

Tobacco etch virus (TEV) encodes three proteinases that catalyze processing of the genome-encoded polyprotein. The P1 proteinase originates from the N terminus of the polyprotein and catalyzes proteolysis between itsel ...
Developing Models for the Forage Ratios of Culiseta melanura and Culex erraticus using Species Characteristics for Avian Hosts

Estep, Laura K.; McClure, Christopher J. W.; Burkett-Cadena, Nathan D.; Hassan, Hassan K.; Unnasch, Thomas R.; Hill, Geoffrey E. (Entomological Society of America, 2012)

Studies of mosquito preferences for avian hosts have found that some bird species are at greater risk than others of being fed upon by mosquitoes. The ecological factors that determine this interspecific variation in avi ...
Development and Evaluation of a 9K SNP Array for Peach by Internationally Coordinated SNP Detection and Validation in Breeding Germplasm

Verde, Ignazio; Bassil, Nahla; Scalabrin, Simone; Gilmore, Barbara; Lawley, Cynthia T.; Gasic, Ksenija; Micheletti, Diego; Rosyara, Umesh R.; Cattonaro, Federica; Vendramin, Elisa; Main, Dorrie; Aramini, Valeria; Blas, Andrea L.; Mockler, Todd C.; Bryant, Douglas W.; Wilhelm, Larry; Troggio, Michela; Sosinski, Bryon; Jose Aranzana, Maria; Arus, Pere; Iezzoni, Amy; Morgante, Michele; Peace, Cameron (Public Library of Science, 2012-04-20)

Although a large number of single nucleotide polymorphism (SNP) markers covering the entire genome are needed to enable molecular breeding efforts such as genome wide association studies, fine mapping, genomic selection ...
Distinct Argonaute-mediated 22G-RNA pathways direct genome surveillance in the C. elegans germline

Gu, Weifeng; Shirayama, Masaki; Conte Jr., Darryl; Vasale, Jessica; Batista, Pedro J.; Claycomb, Julie M.; Moresco, James J.; Youngman, Elaine; Keys, Jennifer; Stoltz, Matthew J.; Chen, Chun-Cheih G.; Chaves, Daniel A.; Duan, Shenghua E.; Kasschau, Krisitin D.; Fahlgren, Noah; Yates III, John R.; Mitani, Shohei; Carrington, James C.; Mello, Craig C. (Elsevier Inc., 2010-10-23)

Endogenous small RNAs (endo-siRNAs) interact with Argonaute (AGO) proteins to mediate sequence-specific regulation of diverse biological processes. Here, we combine deep-sequencing and genetic approaches to explore the ...
Distribution of Potato virus Y Strains in Tubers during the Post-Harvest Period

Whitworth, Jonathan L.; Hamm, Philip B.; Nolte, Phillip (Springer, 2012-02-21)

Russet Burbank, Russet Norkotah, and Shepody tubers infected with Potato virus Y strains (PVYO, PVYN:O, PVYNTN) were tested from storage at 4A degrees C at the initiation of sprouting and then the same tubers were tested ...
Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

Ohm, Robin A.; Feau, Nicolas; Henrissat, Bernard; Schoch, Conrad L.; Horwitz, Benjamin A.; Barry, Kerrie W.; Condon, Bradford J.; Copeland, Alex C.; Dhillon, Braham; Glaser, Fabian; Hesse, Cedar N.; Kosti, Idit; LaButti, Kurt; Lindquist, Erika A.; Lucas, Susan; Salamov, Asaf A.; Bradshaw, Rosie E.; Ciuffetti, Lynda; Hamelin, Richard C.; Kema, Gert H. J.; Lawrence, Christopher; Scott, James A.; Spatafora, Joseph W.; Turgeon, B. Gillian; de Wit, Pierre J. G. M.; Zhong, Shaobin; Goodwin, Stephen B.; Grigoriev, Igor V. (Public Library of Science, 2012-12-06)
The Effect of Iron Limitation on the Transcriptome and Proteome of Pseudomonas fluorescens Pf-5

Lim, Chee Kent; Hassan, Karl A.; Tetu, Sasha G.; Loper, Joyce E.; Paulsen, Ian T. (Public Library of Science, 2012-06-18)

One of the most important micronutrients for bacterial growth is iron, whose bioavailability in soil is limited. Consequently, rhizospheric bacteria such as Pseudomonas fluorescens employ a range of mechanisms to acquire ...