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Browsing Faculty Research Publications (Botany and Plant Pathology) by Title

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Browsing Faculty Research Publications (Botany and Plant Pathology) by Title

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  • Monaco, Marcela K.; Sen, Taner Z.; Dharmawardhana, Palitha D.; Ren, Liya; Schaeffer, Mary; Naithani, Sushma; Amarasinghe, Vindhya; Thomason, Jim; Harper, Lisa; Gardiner, Jack; Cannon, Ethalinda K.S.; Lawrence, Carolyn J.; Ware, Doreen; Jaiswal, Pankaj (Crop Science Society of America, 2013-03)
    A framework for understanding the synthesis and catalysis of metabolites and other biochemicals by proteins is crucial for unraveling the physiology of cells. To create such a framework for Zea mays L. subsp. mays (maize ...
  • Pethybridge, Sarah J.; Gent, David H.; Groom, Tim; Hay, Frank S. (The American Phytopathological Society, 2013-11)
    The most damaging foliar disease of pyrethrum in Australia is ray blight caused by Stagonosporopsis tanaceti. The probability of growers incurring economic losses caused by this disease has been substantially reduced ...
  • Elliott, Todd F.; Bougher, Neale L.; O'Donnell, Kerry; Trappe, James M. (Allen Press Inc., 2014-01)
    An abundant fruiting of a black morel was encountered in temperate northwestern New South Wales (NSW), Australia, during a mycological survey in Sep 2010. The site was west of the Great Dividing Range in a young, dry ...
  • Chen, Ming-Jun; Huang, Bo; Li, Zeng-Zhi; Spatafora, Joseph (Mycotaxon, Ltd., 2013-04)
    —Beauveria sinensis sp. nov. was isolated from a larva of Geometridae (Lepidoptera) collected from Tiantangzhai, Anhui province, China. It is characterized by elongated ellipsoidal to cylindrical conidia, solitary coni ...
  • Cronn, Richard; Liston, Aaron; Parks, Matthew; Gernandt, David S.; Shen, Rongkun; Mockler, Todd (Oxford University Press, 2008-07-21)
    Organellar DNA sequences are widely used in evolutionary and population genetic studies, however, the conservative nature of chloroplast gene and genome evolution often limits phylogenetic resolution and statistical powe ...
  • Kimbrel, Jeffrey A.; Thomas, William J.; Jiang, Yuan; Creason, Allison L.; Thireault, Caitlin A.; Sachs, Joel L.; Chang, Jeff H. (Public Library of Science, 2013-02-28)
    Two diametric paradigms have been proposed to model the molecular co-evolution of microbial mutualists and their eukaryotic hosts. In one, mutualist and host exhibit an antagonistic arms race and each partner evolves rap ...
  • Amari, Khalid; Di Donato, Martin; Dolja, Valerian V.; Heinlein, Manfred (Public Library of Science, 2014-10-16)
    Viruses are obligatory parasites that depend on host cellular factors for their replication as well as for their local and systemic movement to establish infection. Although myosin motors are thought to contribute to pl ...
  • Sheard, John W.; McCune, Bruce; Tønsberg, Tor (The American Bryological and Lichenological Society, Inc., 2014-07-30)
    Rinodina pallidescens is described as a new species, endemic to southern Alaska. Rinodina buckii and R. oregana are discussed in terms of their range extensions and possible phytogeographic histories.
  • Shen, Qingxi J.; Yu, Diqiu; Jeon, Jong-Seong; Piffanelli, Pietro; Abbruscato, Pamela; Guo, Ze-Jian; Zhang, Yuanji; Itoh, Takeshi; Lee, Sung S.; Buell, C. Robin; Nagato, Yasuo; McCouch, Susan; Yano, Masahiro; Wang, Guo-liang; Jena, Kshirod K.; Xiong, Lizhong; Meyers, Blake; Jaiswal, Pankaj; Yamazaki, Yukiko (Springer, 2012-02-27)
    Background: Since whole genome sequences of rice were made publically accessible, the number of articles on new rice genes has increased remarkably. The Committee on Gene Symbolization, Nomenclature and Linkage (CGSNL) o ...
  • Rosso, Abbey; Neitlich, Peter; Smith, Robert J. (Public Library of Science, 2014-07-31)
    Terrestrial lichen biomass is an important indicator of forage availability for caribou in northern regions, and can indicate vegetation shifts due to climate change, air pollution or changes in vascular plant community ...
  • McCune, Bruce (IAVS Opulus Press, Uppsala, 2006)
    Questions: Can a statistical model be designed to represent more directly the nature of organismal response to multiple interacting factors? Can multiplicative ernel smoothers be used for this purpose? What advantages do ...
  • Seguin, Jonathan; Rajeswaran, Rajendran; Malpica-López, Nachelli; Martin, Robert R.; Kasschau, Kristin; Dolja, Valerian V.; Otten, Patricia; Farinelli, Laurent; Pooggin, Mikhail M. (Public Library of Science, 2014-02-11)
    Virus-infected plants accumulate abundant, 21–24 nucleotide viral siRNAs which are generated by the evolutionary conserved RNA interference (RNAi) machinery that regulates gene expression and defends against invasive nu ...
  • Walls, Ramona L.; Athreya, Balaji; Cooper, Laurel; Elser, Justin; Gandolfo, Maria A.; Jaiswal, Pankaj; Mungall, Christopher J.; Preece, Justin; Rensing, Stefan; Smith, Barry; Stevenson, Dennis W. (Botanical Society of America, 2012-08)
    Premise of the study: Bio-ontologies are essential tools for accessing and analyzing the rapidly growing pool of plant genomic and phenomic data. Ontologies provide structured vocabularies to support consistent aggregati ...
  • Kumar, T.K. Arun; Healy, Rosanne; Spatafora, Joseph W.; Blackwell, Meredith; McLaughlin, David J. (The Mycological Society of America, 2012-03)
    Molecular phylogenctic analyses indicate that the monophyletic classes Orbiliomycetes and Pezizomycetes are among the earliest diverging branches of Pezizomycotina, the largest subphylum of the Ascomycota. Although Orbil ...
  • Arighi, Cecilia N.; Carterette, Ben; Cohen, K. Bretonnel; Krallinger, Martin; Wilbur, W. John; Fey, Petra; Dodson, Robert; Cooper, Laurel; Van Slyke, Ceri E.; Dahdul, Wasila; Mabee, Paula; Li, Donghui; Harris, Bethany; Gillespie, Marc; Jimenez, Silvia; Roberts, Phoebe; Matthews, Lisa; Becker, Kevin; Drabkin, Harold; Bello, Susan; Licata, Luana; Chatr-aryamontri, Andrew; Schaeffer, Mary L.; Park, Julie; Haendel, Melissa; Van Auken, Kimberly; Li, Yuling; Chan, Juancarlos; Muller, Hans-Michael; Cui, Hong; Balhoff, James P.; Wu, Johnny Chi-Yang; Lu, Zhiyong; Wei, Chih-Hsuan; Tudor, Catalina O.; Raja, Kalpana; Subramani, Suresh; Natarajan, Jeyakumar; Cejuela, Juan Miguel; Dubey, Pratibha; Wu, Cathy (Oxford University Press, 2013-01-17)
    In many databases, biocuration primarily involves literature curation, which usually involves retrieving relevant articles, extracting information that will translate into annotations and identifying new incoming literat ...
  • Stockwell, Virginia O.; Davis, Edward W., II; Carey, Alyssa; Shaffer, Brenda T.; Mavrodi, Dmitri V.; Hassan, Karl A.; Hockett, Kevin; Thomashow, Linda S.; Paulsen, Ian T.; Lopera, Joyce E. (American Society for Microbiology, 2013-06-28)
    Conjugative plasmids are known to facilitate the acquisition and dispersal of genes contributing to the fitness of Pseudomonas spp. Here, we report the characterization of pA506, the 57-kb conjugative plasmid of Pseudomo ...
  • Floudas, Dimitrios; Binder, Manfred; Riley, Robert; Barry, Kerrie; Blanchette, Robert A.; Henrissat, Bernard; Martínez, Angel T.; Otillar, Robert; Spatafora, Joseph W.; Yadav, Jagjit S.; Aerts, Andrea; Benoit, Isabelle; Boyd, Alex; Carlson, Alexis; Copeland, Alex; Coutinho, Pedro M.; de Vries, Ronald P.; Ferreira, Patricia; Findley, Keisha; Foster, Brian; Gaskell, Jill; Glotzer, Dylan; Gorecki, Pawel; Heitman, Joseph; Hesse, Cedar; Hori, Chiaki; Igarashi, Kiyohiko; Jurgens, Joel A.; Kallen, Nathan; Kersten, Phil; Kohler, Annegret; Kues, Ursula; Kumar, T. K. Arun; Kuo, Alan; LaButti, Kurt; Larrondo, Luis F.; Lindquist, Erika; Ling, Albee; Lombard, Vincent; Lucas, Susan; Lundell, Taina; Martin, Rachael; McLaughlin, David J.; Morgenstern, Ingo; Morin, Emanuelle; Murat, Claude; Nagy, Laszlo G.; Nolan, Matt; Ohm, Robin A.; Patyshakuliyeva, Aleksandrina; Rokas, Antonis; Ruiz-Duenas, Francisco J.; Sabat, Grzegorz; Salamov, Asaf; Samejima, Masahiro; Schmutz, Jeremy; Slot, Jason C.; St. John, Franz; Stenlid, Jan; Sun, Hui; Sun, Sheng; Syed, Khajamohiddin; Tsang, Adrian; Wiebenga, Ad; Young, Darcy; Pisabarro, Antonio; Eastwood, Daniel C.; Martin, Francis; Cullen, Dan; Grigoriev, Igor V.; Hibbett, David S. (American Association for the Advancement of Science, 2012-06-29)
    Wood is a major pool of organic carbon that is highly resistant to decay, owing largely to the presence of lignin. The only organisms capable of substantial lignin decay are white rot fungi in the Agaricomycetes, which a ...
  • Jeong, Dong-Hoon; Schmidt, Skye A.; Rymarquis, Linda A.; Park, Sunhee; Ganssmann, Matthias; German, Marcelo A.; Accerbi, Monica; Zhai, Jixian; Fahlgren, Noah; Fox, Samuel E.; Garvin, David F.; Mockler, Todd C.; Carrington, James C.; Meyers, Blake C.; Green, Pamela J. (BioMed Central Ltd., 2013-12-24)
    BACKGROUND: The wild grass Brachypodium distachyon has emerged as a model system for temperate grasses and biofuel plants. However, the global analysis of miRNAs, molecules known to be key for eukaryotic gene regulation ...
  • Stockey, Ruth A.; Rothwell, Gar W. (University of Chicago Press, 2013-03)
    A cylindrical permineralized conifer seed cone has been identified from the Officer Member of the Trowbridge Formation, near Izee, in east-central Oregon. The cone is preserved in a Middle Jurassic (Callovian) marine cal ...
  • Escapa, Ignacio H.; Cuneo, Nestor R.; Rothwell, Gar; Stockey, Ruth A. (University of Chicago Press, 2013-03)
    The discovery of 16 cylindrical conifer seed cones at the Estancia Vilan locality in the Late Jurassic Canadon Calcareo Formation of Chubut Province, Patagonia, Argentina, provides anatomically preserved specimens, allow ...

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