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Browsing Faculty Research Publications (Botany and Plant Pathology) by Title

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Browsing Faculty Research Publications (Botany and Plant Pathology) by Title

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  • Stockwell, Virginia O.; Davis, Edward W., II; Carey, Alyssa; Shaffer, Brenda T.; Mavrodi, Dmitri V.; Hassan, Karl A.; Hockett, Kevin; Thomashow, Linda S.; Paulsen, Ian T.; Lopera, Joyce E. (American Society for Microbiology, 2013-06-28)
    Conjugative plasmids are known to facilitate the acquisition and dispersal of genes contributing to the fitness of Pseudomonas spp. Here, we report the characterization of pA506, the 57-kb conjugative plasmid of Pseudomo ...
  • Floudas, Dimitrios; Binder, Manfred; Riley, Robert; Barry, Kerrie; Blanchette, Robert A.; Henrissat, Bernard; Martínez, Angel T.; Otillar, Robert; Spatafora, Joseph W.; Yadav, Jagjit S.; Aerts, Andrea; Benoit, Isabelle; Boyd, Alex; Carlson, Alexis; Copeland, Alex; Coutinho, Pedro M.; de Vries, Ronald P.; Ferreira, Patricia; Findley, Keisha; Foster, Brian; Gaskell, Jill; Glotzer, Dylan; Gorecki, Pawel; Heitman, Joseph; Hesse, Cedar; Hori, Chiaki; Igarashi, Kiyohiko; Jurgens, Joel A.; Kallen, Nathan; Kersten, Phil; Kohler, Annegret; Kues, Ursula; Kumar, T. K. Arun; Kuo, Alan; LaButti, Kurt; Larrondo, Luis F.; Lindquist, Erika; Ling, Albee; Lombard, Vincent; Lucas, Susan; Lundell, Taina; Martin, Rachael; McLaughlin, David J.; Morgenstern, Ingo; Morin, Emanuelle; Murat, Claude; Nagy, Laszlo G.; Nolan, Matt; Ohm, Robin A.; Patyshakuliyeva, Aleksandrina; Rokas, Antonis; Ruiz-Duenas, Francisco J.; Sabat, Grzegorz; Salamov, Asaf; Samejima, Masahiro; Schmutz, Jeremy; Slot, Jason C.; St. John, Franz; Stenlid, Jan; Sun, Hui; Sun, Sheng; Syed, Khajamohiddin; Tsang, Adrian; Wiebenga, Ad; Young, Darcy; Pisabarro, Antonio; Eastwood, Daniel C.; Martin, Francis; Cullen, Dan; Grigoriev, Igor V.; Hibbett, David S. (American Association for the Advancement of Science, 2012-06-29)
    Wood is a major pool of organic carbon that is highly resistant to decay, owing largely to the presence of lignin. The only organisms capable of substantial lignin decay are white rot fungi in the Agaricomycetes, which a ...
  • Jeong, Dong-Hoon; Schmidt, Skye A.; Rymarquis, Linda A.; Park, Sunhee; Ganssmann, Matthias; German, Marcelo A.; Accerbi, Monica; Zhai, Jixian; Fahlgren, Noah; Fox, Samuel E.; Garvin, David F.; Mockler, Todd C.; Carrington, James C.; Meyers, Blake C.; Green, Pamela J. (BioMed Central Ltd., 2013-12-24)
    BACKGROUND: The wild grass Brachypodium distachyon has emerged as a model system for temperate grasses and biofuel plants. However, the global analysis of miRNAs, molecules known to be key for eukaryotic gene regulation ...
  • Stockey, Ruth A.; Rothwell, Gar W. (University of Chicago Press, 2013-03)
    A cylindrical permineralized conifer seed cone has been identified from the Officer Member of the Trowbridge Formation, near Izee, in east-central Oregon. The cone is preserved in a Middle Jurassic (Callovian) marine cal ...
  • Escapa, Ignacio H.; Cuneo, Nestor R.; Rothwell, Gar; Stockey, Ruth A. (University of Chicago Press, 2013-03)
    The discovery of 16 cylindrical conifer seed cones at the Estancia Vilan locality in the Late Jurassic Canadon Calcareo Formation of Chubut Province, Patagonia, Argentina, provides anatomically preserved specimens, allow ...
  • Nelson, Peter R.; Kepler, Ryan; Walton, James; Fankhauser, John; Nelson, Laura; Song, Wang Li (The American Bryological and Lichenological Society, Inc., 2012-11-15)
    Parmelina quercina is a well-studied foliose macro-lichen found on rocks and trees in the Northern Hemisphere. Recent studies support multiple species within P. quercina based on material from Europe, North America and w ...
  • Dall Olmo, G.; Boss, E.; Behrenfeld, M.J.; Westberry, T.K. (Optical Society of America, 2012-09-10)
    See article for abstract.
  • Weiland, Jerry E.; Beck, Bryan R.; Davis, Anne (The American Phytopathological Society, 2013-06)
    Pythium species are common soilborne oomycetes that occur in forest nursery soils throughout the United States. Numerous species have been described from nursery soils. However, with the exception of P. aphanidermatum, P ...
  • Stehn, Sarah E.; Nelson, Peter R.; Roland, Carl A.; Jones, Jennifer R. (The American Bryological and Lichenological Society, Inc, 2013-04-17)
    We investigated habitat attributes related to the occupancy of the globally rare and endangered epiphytic lichen, Erioderma pedicellatum, in a newly discovered (2009) population center in Denali National Park and Prese ...
  • Bronson, Allison W.; Klymiuk, Ashley A.; Stockey, Ruth A.; Tomescu, Alexandru M. F. (The University of Chicago Press, 2013-03)
    A perithecial ascomycete, Spataporthe taylori gen. et sp. nov., represented by >70 sporocarps is preserved by cellular permineralization in marine carbonate concretions dated at the Valanginian-Hauterivian boundary (Ear ...
  • Givan, Scott A.; Sullivan, Christopher M.; Carrington, James C. (BioMed Central, 2007-12-18)
    Background: Large molecular sequence databases are fundamental resources for modern bioscientists. Whether for project-specific purposes or sharing data with colleagues, it is often advantageous to maintain smaller seq ...
  • Dunn, Michael T.; Rothwell, Gar W. (University of Chicago Press, 2012-09)
    Fifty-nine stems of Tetrastichia bupatides, numerous frond segments, and roots from Oxroad Bay, Scotland, have recently been analyzed. They reveal that many characters originally used to describe this species exhibit a w ...
  • Ye, Wenwu; Wang, Yang; Dong, Suomeng; Tyler, Brett M.; Wang, Yuanchao (BioMed Central Ltd., 2013-11-28)
    BACKGROUND: Basic leucine zipper (bZIP) transcription factors are present exclusively in eukaryotes and constitute one of the largest and most diverse transcription factor families. The proteins are responsible for cent ...
  • Soza, Valerie L.; Brunet, Johanne; Liston, Aaron; Smith, Patricia Salles; Di Stilio, Veronica S. (Elsevier, 2012-04)
    Numerous studies have examined the evolution of sexual systems in angiosperms, but few explore the interaction between these and the evolution of pollination mode. Wind pollination is often associated with unisexual fl ...
  • Yang, Jie; Swenson, Nathan G.; Cao, Min; Chuyong, George B.; Ewango, Corneille E. N.; Howe, Robert; Kenfack, David; Thomas, Duncan; Wolf, Amy; Lin, Luxiang (Public Library of Science, 2013-05-01)
    Ecologists have historically used species-area relationships (SARs) as a tool to understand the spatial distribution of species. Recent work has extended SARs to focus on individual-level distributions to generate indivi ...
  • Kepler, Ryan; Ban, Sayaka; Nakagiri, Akira; Bischoff, Joseph; Hywel-Jones, Nigel; Owensby, Catherine Alisha; Spatafora, Joseph W. (Elsevier, 2013-07-09)
    Understanding the systematics and evolution of clavicipitoid fungi has been greatly aided by the application of molecular phylogenetics. They are now classified in three families, largely driven by reevaluation of the ...
  • Spatafora, Joseph W.; Owensby, C. Alisha; Douhan, Greg W.; Boehm, Eric W. A.; Schoch, Conrad L. (The Mycological Society of America, 2012-05)
    Cenococcum is a genus of ectomycorrhizal Ascomycota that has a broad host range and geographic distribution. It is not known to produce either meiotic or mitotic spores and is known to exist only in the form of hyphae, s ...
  • Kelso, Sylvia; Beardsley, Paul M.; Weitemier, Kevin (The University of Chicago Press, 2009-01)
    Primula sect. Parryi comprises five species endemic to western North America: P. parryi, P. angustifolia, P. rusbyi, P. capillaris, and P. cusickiana with four varieties. This section, derived from a clade with represen ...
  • Hansen, Everett M.; Reeser, Paul W.; Sutton, Wendy (The Mycological Society of America, 2012-09)
    Phytophthora borealis and Phytophthora riparia, identified in recent Phytophthora surveys of forest streams in Oregon, California and Alaska, are described as new species in Phytophthora ITS Glade 6. They are similar in ...
  • Fahlgren, Noah; Bollmann, Stephanie R.; Kasschau, Kristin D.; Cuperus, Josh T.; Press, Caroline M.; Sullivan, Christopher M.; Chapman, Elisabeth J.; Hoyer, J. Steen; Gilbert, Kerrigan B.; Grunwald, Niklaus J.; Carrington, James C. (Public Library of Science, 2013-10-21)
    In eukaryotes, RNA silencing pathways utilize 20-30-nucleotide small RNAs to regulate gene expression, specify and maintain chromatin structure, and repress viruses and mobile genetic elements. RNA silencing was likely p ...

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