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Browsing Faculty Research Publications (Botany and Plant Pathology) by Title

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Browsing Faculty Research Publications (Botany and Plant Pathology) by Title

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  • International Arabidopsis Informatics Consortium; Baerenfaller, Katja; Bastow, Ruth; Jaiswal, Pankaj; et al. (American Society of Plant Biologists, 2012-06)
    The Arabidopsis Information Portal (AIP), a resource expected to provide access to all community data and combine outputs into a single user-friendly interface, has emerged from community discussions over the last 23 mo ...
  • Cronn, Richard; Knaus, Brian J.; Liston, Aaron; Maughan, Peter J.; Parks, Matthew; Syring, John V.; Udall, Joshua (Botanical Society of America, 2012-02)
    • Premise of the study: The dramatic advances offered by modern DNA sequencers continue to redefine the limits of what can be accomplished in comparative plant biology. Even with recent achievements, however, plant genom ...
  • Severns, Paul M.; Meyers, Stephen C.; Tran, Tri (Western North American Naturalist Publications, 2012-11)
    Through a phylogenetic study Using LECCYCIA nucleotide sequences and a survey of historical Botanical literature, we propose clarifications in the nomenclature of Lupinus oreganus and Lupinus biddlei. The former taxon ha ...
  • Van Auken, Kimberly; Fey, Petra; Berardini, Tanya Z.; Dodson, Robert; Cooper, Laurel; Li, Donghui; Chan, Juancarlos; Li, Yuling; Basu, Siddhartha; Muller, Hans-Michael; Chisholm, Rex; Huala, Eva; Sternberg, Paul W.; WormBase Consortium (Oxford University Press, 2012-11-17)
    WormBase, dictyBase and The Arabidopsis Information Resource (TAIR) are model organism databases containing information about Caenorhabditis elegans and other nematodes, the social amoeba Dictyostelium discoideum and rel ...
  • Dubbels, Bradley L.; Sayavedra-Soto, Luis A.; Bottomley, Peter J.; Arp, Daniel J. (Society for General Microbiology, 2009)
    The placement of ‘Pseudomonas butanovora’ in the genus Thauera was proposed previously, based on 16S rRNA gene sequence analysis, upon further studies of taxonomical characteristics. In this study, physiological charac ...
  • Hibbett, David S.; Stajich, Jason E.; Spatafora, Joseph W. (The Mycological Society of America, 2013-11-25)
    Genome-enabled mycology is a rapidly expanding field that is characterized by the pervasive use of genome-scale data and associated computational tools in all aspects of fungal biology. Genome-enabled mycology is int ...
  • Quito-Avila, Diego F.; Lightle, Danielle; Lee, Jana; Martin, Robert R. (American Phytopathological Society, 2012-05)
    Raspberry latent virus (RpLV) is a newly characterized reovirus found in commercial raspberry fields in the Pacific Northwest (PNW). Thus far, all members of the plant reoviruses are transmitted in a replicative, persist ...
  • Pekin, Burak K.; Wisdom, Michael J.; Endress, Bryan A.; Naylor, Bridgett J.; Parks, Catherine G. (Public Library of Science, 2014-01-23)
    Ungulates exert a strong influence on the composition and diversity of vegetation communities. However, little is known about how ungulate browsing pressure interacts with episodic disturbances such as fire and stand th ...
  • Filichkin, Sergei A.; Mockler, Todd C. (BioMed Central Ltd., 2012-07-02)
    Background: Recent mapping of eukaryotic transcriptomes and spliceomes using massively parallel RNA sequencing (RNA-seq) has revealed that the extent of alternative splicing has been considerably underestimated. Evidence ...
  • Gent, David H.; Mahaffee, Walter F.; McRoberts, Neil; Pfender, William F. (Annual Reviews, 2013-05-13)
    Disease predictive systems are intended to be management aids. With a few exceptions, these systems typically do not have direct sustained use by growers. Rather, their impact is mostly pedagogic and indirect, improvi ...
  • Stockwell, V. O.; Duffy, B. (International Office of Epizootics = Office International des Epizooties, World Organisation for Animal Health, 2012-04)
    Antibiotics are essential for control of bacterial diseases of plants, especially fire blight of pear and apple and bacterial spot of peach. Streptomycin is used in several countries; the use of oxytetracycline, oxolin ...
  • Gernandt, David S.; Magallon, Susana; Lopez, Gretel Geada; Flores, Omar Zeron; Willyard, Ann; Liston, Aaron (University of Chicago Press, 2008-10)
    Uncertainties in the age and phylogenetic position of Pinaceae fossils present significant obstacles to our understanding of the timing of diversification in the family. We demonstrate that simultaneous phylogenetic an ...
  • Mucyn, Tatiana S.; Yourstone, Scott; Lind, Abigail L.; Biswas, Surojit; Nishimura, Marc T.; Baltrus, David A.; Cumbie, Jason S.; Chang, Jeff H.; Jones, Corbin D.; Dangl, Jeffery L.; Grant, Sarah R. (Public Library of Science, 2014-01-02)
    Pseudomonas syringae is a phylogenetically diverse species of Gram-negative bacterial plant pathogens responsible for crop diseases around the world. The HrpL sigma factor drives expression of the major P. syringae viru ...
  • Duren, Olivia C.; Muir, Patricia S.; Hosten, Paul E. (Northwest Scientific Association, 2012-09)
    Faced with landscapes degraded by fire suppression, logging, and grazing, land managers in the interior western US are attempting to restore habitat structure and function. In southwest Oregon, landscape-scale fuels trea ...
  • Koonin, Eugene V.; Dolja, Valerian V. (Elsevier, 2013-10)
    Viruses and/or virus-like selfish elements are associated with all cellular life forms and are the most abundant biological entities on Earth, with the number of virus particles in many environments exceeding the number ...
  • Kurth, Elizabeth G.; Peremyslov, Valera V.; Prokhnevsky, Alexey I.; Kasschau, Kristin D.; Miller, Marilyn; Carrington, James C.; Dolja, Valerian V. (American Society for Microbiology, 2012-06)
    The improvement of the agricultural and wine-making qualities of the grapevine (Vitis vinifera) is hampered by adherence to traditional varieties, the recalcitrance of this plant to genetic modifications, and public resi ...
  • Pujar, Anuradha; Jaiswal, Pankaj; Kellogg, Elizabeth A.; et al. (American Society of Plant Biologists, 2006-10)
    Plant growth stages are identified as distinct morphological landmarks in a continuous developmental process. The terms describing these developmental stages record the morphological appearance of the plant at a specifi ...
  • Hanumappa, Mamatha; Preece, Justin; Elser, Justin; Nemeth, Denise; Bono, Gina; Wu, Kenny; Jaiswal, Pankaj (Springer, 2013)
    Background: Next-generation sequencing and 'omics' platforms are used extensively in plant biology research to unravel new genomes and study their interactions with abiotic and biotic agents in the growth environment. De ...
  • Root, Heather T.; McCune, Myrica; McCune, Bruce (Springer, 2013-05)
    INTRODUCTION: Biotic soil crust communities contribute valuable ecosystem services and biodiversity in steppe ecosystems. The uncommon crust lichens Acarospora schleicheri, Fuscopannaria cyanolepra, Rhizocarpon diplosc ...
  • Dunham, Susie M.; Mujic, Alija Bajro; Spatafora, Joseph W.; Kretzer, Annette M. (The Mycological Society of America, 2013-07)
    Using spatial autocorrelation analysis, we examined the within-population genetic structure of Rhizopogon vinicolor and R. vesiculosus, two hypogeous ectomycorrhizal (EM) species that are sympatric sister taxa known ...

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