Index Catalog // ScholarsArchive@OSU

A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress

Creator:: Dharmawardhana, Palitha, Ren, Liya, Amarasinghe, Vindhya, Monaco, Marcela, Thomason, Jim, Ravenscroft, Dean, McCouch, Susan, Ware, Doreen, and Jaiswal, Pankaj
Abstract:: Background: Functional annotations of large plant genome projects mostly provide information on gene function and gene families based on the presence of protein domains and gene homology, but not necessarily in association with gene expression or metabolic and regulatory networks. These additional annotations are necessary to understand the physiology, development...
Resource Type:: Article
Full Text:: InterPro, Gene Ontology, MetaCyc, and Enzyme Commission (EC) numbers were enriched with annotations

Effects of Preinoculation with VAM fungi isolated from different sites on plant tolerance to salinity in soils amended with sodium chloride

Creator:: Cantrell, Isabella Cardona
Abstract:: The hypothesis that inoculation of transplants with vesicular-arbuscular mycorrhizal (VAM) fungi before planting into saline soils would alleviate salt effects on growth and productivity was tested on lettuce (Lactuca sativa L.) and onion (Allium cepa L.). A secondary hypothesis was that the fungi isolated from a saline soil would be...
Resource Type:: Masters Thesis
Full Text:: .......................................................... .... 38 Final soil EC and pH

2006 Integrated pest management resource guide

Creator:: Jepson, Paul C., Brewer, Linda J., Jepson, Susan B., and Oregon State University. Extension Service
Abstract:: This publication is offered as a reference to Integrated Pest Management (IPM) resources available to Oregon growers. It highlights university, federal, state, and private services and resources that provide support to growers in the implementation of IPM programs. The Guide consists of five sections: • An introduction to the National...
Resource Type:: Technical Report
Full Text:: id e sa fe ty , r eg s, pr ot ec tin g be es In se ct p es ts P la nt d is ea se

D-Lactate metabolism and the obligate requirement for CO2 during growth on nitrite by the facultative lithoautotroph Nitrobacter hamburgensis

Creator:: Starkenburg, Shawn R., Arp, Daniel J., and Bottomley, Peter J.
Abstract:: Nitrobacter hamburgensis X14 is a facultative lithoautotroph that conserves energy from the oxidation of nitrite (NO 2 ) and fixes carbon dioxide (CO2) as its sole source of carbon. The availability of the N. hamburgensis X14 genome sequence initiated a re-examination of its mixotrophic and organotrophic potential, as genes encoding...
Resource Type:: Article
Full Text:: -lactate and 1.4 mCi (518 Mbq) DL-[1-14C]lactate (Sigma-Aldrich). N. hamburgen- sis was inoculated into

The distribution of intertidal diatoms associated with the sediments of Yaquina Estuary, Oregon

Creator:: Amspoker, Michael C.
Abstract:: Sediment samples were collected from eight sampling sites along the Yaquina Estuary, Oregon from Yaquina Bay to Elk City near the head of the estuary. Samples were collected in November 1973, February 1974, May 1974 and August 1974 from two or three intertidal levels depending on the magnitude of the...
Resource Type:: Dissertation

Plastome phylogenomics in the genus Pinus using massively parallel sequencing technology

Creator:: Parks, Matthew Benjamin
Abstract:: This thesis summarizes work completed over the previous four years primarily focusing on chloroplast phylogenomic inquiry into the genus Pinus and related Pinaceae outgroups using next-generation sequencing on Illumina platforms. During the time of our work, Illumina sequence read lengths have essentially been limited to 25 to 100 base pairs,...
Resource Type:: Dissertation

High-Throughput Sequencing of Arabidopsis microRNAs : Evidence for Frequent Birth and Death of MIRNA Genes

Creator:: Fahlgren, Noah, Howell, Miya D., Kasschau, Kristin D., Sullivan, Christopher M., Cumbie, Jason S., Givan, Scott A., Law, Theresa F., Grant, Sarah R., Dangl, Jeffrey L., and Carrington, James C.
Abstract:: In plants, microRNAs (miRNAs) comprise one of two classes of small RNAs that function primarily as negative regulators at the posttranscriptional level. Several MIRNA genes in the plant kingdom are ancient, with conservation extending between angiosperms and the mosses, whereas many others are more recently evolved. Here, we use deep...
Resource Type:: Article

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

Creator:: Ohm, Robin A., Feau, Nicolas, Henrissat, Bernard, Schoch, Conrad L., Horwitz, Benjamin A., Barry, Kerrie W., Condon, Bradford J., Copeland, Alex C., Dhillon, Braham, Glaser, Fabian, Hesse, Cedar N., Kosti, Idit, LaButti, Kurt, Lindquist, Erika A., Lucas, Susan, Salamov, Asaf A., Bradshaw, Rosie E., Ciuffetti, Lynda, Hamelin, Richard C., Kema, Gert H. J., Lawrence, Christopher, Scott, James A., Spatafora, Joseph W., Turgeon, B. Gillian, de Wit, Pierre J. G. M., Zhong, Shaobin, Goodwin, Stephen B., and Grigoriev, Igor V.
Abstract:: Correction 5 Mar 2013: Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, et al. (2013) Correction: Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi. PLOS Pathogens 9(3): 10.1371/annotation/fcca88ac-d684-46e0-a483-62af67e777bd
Resource Type:: Article
Full Text:: ) B R O A D [1 2 4 ] N ec tr ia h a em a to co cc a So rd a ri o m yc et es H yp o cr

The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster

Creator:: Bushley, Kathryn E., Raja, Rajani, Jaiswal, Pankaj, Cumbie, Jason S., Nonogaki, Mariko, Boyd, Alexander E., Owensby, C. Alisha, Knaus, Brian J., Elser, Justin, Miller, Daniel, Di, Yanming, McPhail, Kerry L., and Spatafora, Joseph W.
Abstract:: The ascomycete fungus Tolypocladium inflatum, a pathogen of beetle larvae, is best known as the producer of the immunosuppressant drug cyclosporin. The draft genome of T. inflatum strain NRRL 8044 (ATCC 34921), the isolate from which cyclosporin was first isolated, is presented along with comparative analyses of the biosynthesis of...
Resource Type:: Article
Full Text:: targets and binds with high affinity human cyclophilin A (hCypA, peptidylprolyl isomerase A, EC: 5.2.1.8

The Effect of Iron Limitation on the Transcriptome and Proteome of Pseudomonas fluorescens Pf-5

Creator:: Lim, Chee Kent, Hassan, Karl A., Tetu, Sasha G., Loper, Joyce E., and Paulsen, Ian T.
Abstract:: One of the most important micronutrients for bacterial growth is iron, whose bioavailability in soil is limited. Consequently, rhizospheric bacteria such as Pseudomonas fluorescens employ a range of mechanisms to acquire or compete for iron. We investigated the transcriptomic and proteomic effects of iron limitation on P. fluorescens Pf-5 by...
Resource Type:: Article

ScholarsArchive@OSU

A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress

Effects of Preinoculation with VAM fungi isolated from different sites on plant tolerance to salinity in soils amended with sodium chloride

2006 Integrated pest management resource guide

D-Lactate metabolism and the obligate requirement for CO2 during growth on nitrite by the facultative lithoautotroph Nitrobacter hamburgensis

The distribution of intertidal diatoms associated with the sediments of Yaquina Estuary, Oregon

Plastome phylogenomics in the genus Pinus using massively parallel sequencing technology

High-Throughput Sequencing of Arabidopsis microRNAs : Evidence for Frequent Birth and Death of MIRNA Genes

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster

The Effect of Iron Limitation on the Transcriptome and Proteome of Pseudomonas fluorescens Pf-5

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