Index Catalog // ScholarsArchive@OSU

Some crown gall inoculation experiments with special reference to the stomata as possible ports of entry

Creator:: Patty, Frank Alexander
Resource Type:: Masters Thesis
Full Text:: reference to the stomata as possible ports of entry THESIS Some Crown 0811 Inoculation Experi. 'lents

Studies of the crinkle disease of strawberry, with special reference to its transmission

Creator:: Vaughan, Edward Kemp
Resource Type:: Masters Thesis
Full Text:: special reference to its transmission T HE S I S on STUDIES OF THE CRINKLE DISEASE OF STRAT(BEPY

The Gene Ontology in 2010: extensions and refinements

Creator:: Gene Ontology Consortium, Berardini, Tanya Z., Li, Donghui, Huala, Eva, Bridges, Susan, Burgess, Shane, McCarthy, Fiona, Carbon, Seth, Lewis, Suzanna E., Mungall, Christopher J., Abdulla, Amina, Wood, Valerie, Feltrin, Erika, Valle, Giorgio, Chisholm, Rex L., Fey, Petra, Gaudet, Pascale, Kibbe, Warren, Basu, Siddhartha, Bushmanova, Yulia, Eilbeck, Karen, Siegele, Deborah A., McIntosh, Brenley, Renfro, Daniel, Zweifel, Adrienne, Hu, James C., Harris, Midori A., Deegan, Jennifer I., Ireland, Amelia, Lomax, Jane, Jaiswal, Pankaj, Chibucos, Marcus, Gwinn-Giglio, Michelle, Wortman, Jennifer, Hannick, Linda, Madupu, Ramana, Botstein, David, Dolinski, Kara, Livstone, Michael S., Oughtred, Rose, Blake, Judith A., Bult, Carol, Diehl, Alexander D., Dolan, Mary, Drabkin, Harold, Eppig, Janan T., Hill, David P., Ni, Li, Ringwald, Martin, Sitnikov, Dmitry, Collmer, Candace, Torto-Alalibo, Trudy, Laulederkind, Stan, Shimoyama, Mary, Twigger, Simon, D'Eustachio, Peter, Matthews, Lisa, Balakrishnan, Rama, Binkley, Gail, Cherry, J. Michael, Christie, Karen R., Costanzo, Maria C., Engel, Stacia R., Fisk, Dianna G., Hirschman, Jodi E., Hitz, Benjamin C., Hong, Eurie L., Krieger, Cynthia J., Miyasato, Stuart R., Nash, Robert S., Park, Julie, Skrzypek, Marek S., Weng, Shuai, Wong, Edith D., Aslett, Martin, Chan, Juancarlos, Kishore, Ranjana, Sternberg, Paul, Van Auken, Kimberly, Khodiyar, Varsha K., Lovering, Ruth C., and Talmud, Philippa J.
Abstract:: The Gene Ontology (GO) Consortium (http://www.geneontology.org) (GOC) continues to develop, maintain and use a set of structured, controlled vocabularies for the annotation of genes, gene products and sequences. The GO ontologies are expanding both in content and in structure. Several new relationship types have been introduced and used, along with...
Resource Type:: Article
Full Text:: , annotated gene products, and species in which gene products are annotated. The Reference Genome project (3

Finding Our Way through Phenotypes

Creator:: Deans, Andrew R., Lewis, Suzanna E., Huala, Eva, Anzaldo, Salvatore S., Ashburner, Michael, Balhoff, James P., Blackburn, David C., Blake, Judith A., Burleigh, J. Gordon, Chanet, Bruno, Cooper, Lauren D., Courtot, Mélanie, Csösz, Sándor, Cul, Hong, Dahdul, Wasila, Das, Sandip, Dececchi, T. Alexander, Dettal, Agnes, Diogo, Rui, Druzinsky, Robert E., Dumontier, Michel, Franz, Nico M., Friedrich, Frank, Gkoutos, George V., Haendel, Melissa, Harmon, Luke J., Hayamizu, Terry F., He, Yongqun, Hines, Heather M., Ibrahim, Nizar, Jackson, Laura M., Jaiswal, Pankaj, James-Zorn, Christina, Köhler, Sebastian, Lecointre, Guillaume, Lapp, Hilmar, Lawrence, Carolyn J., Le Novère, Nicolas, Lundberg, John G., Macklin, James, Mast, Austin R., Midford, Peter E., Mikó, István, Mungall, Christopher J., Oellrich, Anika, Osumi-Sutherland, David, Parkinson, Helen, Ramírez, Martín J., Richter, Stefan, Robinson, Peter N., Ruttenberg, Alan, Schulz, Katja S., Segerdell, Erik, Seltmann, Katja C., Sharkey, Michael J., Smith, Aaron D., Smith, Barry, Specht, Chelsea D., Squires, R. Burke, Thacker, Robert W., Thessen, Anne, Fernandez-Triana, Jose, Vihinen, Mauno, Vize, Peter D., Vogt, Lars, Wall, Christine E., Walls, Ramona L., Westerfeld, Monte, Wharton, Robert A., Wirkner, Christian S., Woolley, James B., Yoder, Matthew J., Zorn, Aaron M., and Mabee, Paula
Abstract:: Despite a large and multifaceted effort to understand the vast landscape of phenotypic data, their current form inhibits productive data analysis. The lack of a community-wide, consensus-based, human- and machine-interpretable language for describing phenotypes and their genomic and environmental contexts is perhaps the most pressing scientific bottleneck to integration across...
Resource Type:: Article
Full Text:: national d’Histoire naturelle, Département Systématique et Evolution, Paris, France, 12 Department of

Studies to facilitate reintroduction of golden paintbrush (Castilleja levisecta) to the Willamette Valley, Oregon

Creator:: Lawrence, Beth A.
Abstract:: Golden paintbrush (Castilleja levisecta Greenman) historically inhabited the prairies of the Willamette Valley, Oregon. However, this Pacific Northwest endemic is currently restricted to eleven sites in the Puget Trough of Washington and British Columbia. Recovery criteria call for the establishment of new populations throughout the species historic range, including the...
Resource Type:: Masters Thesis
Full Text:: . Lawrence for the degree of Master of Science in Botany and Plant Pathology presented on December 12, 2005

Evolutionary relationships among Pinus (Pinaceae) subsections inferred from multiple low-copy nuclear loci

Creator:: Syring, John, Willyard, Ann, Cronn, Richard, and Liston, Aaron
Abstract:: Sequence data from nrITS and cpDNA have failed to fully resolve phylogenetic relationships among Pinus species. Four low‐copy nuclear genes, developed from the screening of 73 mapped conifer anchor loci, were sequenced from 12 species representing all subsections. Individual loci do not uniformly support either the nrITS or cpDNA hypotheses...
Resource Type:: Article
Full Text:: (12): 2086–2100. 2005. EVOLUTIONARY RELATIONSHIPS AMONG PINUS (PINACEAE) SUBSECTIONS INFERRED FROM

Quantitative Trait Loci Associated with the Tocochromanol (Vitamin E) Pathway in Barley

Creator:: Graebner, Ryan C., Wise, Mitchell, Cuesta-Marcos, Alfonso, Geniza, Matthew, Blake, Tom, Blake, Victoria C., Butler, Joshua, Chao, Shiaoman, Hole, David J., Horsley, Rich, Jaiswal, Pankaj, Obert, Don, Smith, Kevin P., Ullrich, Steven, and Hayes, Patrick M.
Abstract:: The Genome-Wide Association Studies approach was used to detect Quantitative Trait Loci associated with tocochromanol concentrations using a panel of 1,466 barley accessions. All major tocochromanol types- α-, β-, δ-, γ-tocopherol and tocotrienol- were assayed. We found 13 single nucleotide polymorphisms associated with the concentration of one or more of...
Resource Type:: Article
Full Text:: , United States of America, 12 Department of Crop and Soil Science, Washington State University, Pullman

Maize Metabolic Network Construction and Transcriptome Analysis

Creator:: Monaco, Marcela K., Sen, Taner Z., Dharmawardhana, Palitha D., Ren, Liya, Schaeffer, Mary, Naithani, Sushma, Amarasinghe, Vindhya, Thomason, Jim, Harper, Lisa, Gardiner, Jack, Cannon, Ethalinda K.S., Lawrence, Carolyn J., Ware, Doreen, and Jaiswal, Pankaj
Abstract:: A framework for understanding the synthesis and catalysis of metabolites and other biochemicals by proteins is crucial for unraveling the physiology of cells. To create such a framework for Zea mays L. subsp. mays (maize), we developed MaizeCyc, a metabolic network of enzyme catalysts, proteins, carbohydrates, lipids, amino acids, secondary...
Resource Type:: Article
Full Text:: . 1 1 OF 12 ORIGINAL RESEARCH Maize Metabolic Network Construction and Transcriptome Analysis

Comparative Genomics of a Plant-Pathogenic Fungus, Pyrenophora tritici-repentis, Reveals Transduplication and the Impact of Repeat Elements on Pathogenicity and Population Divergence

Creator:: Manning, Viola A., Pandelova, Iovanna, Dhillon, Braham, Wilhelm, Larry J., Goodwin, Stephen B., Berlin, Aaron M., Figueroa, Melania, Freitag, Michael, Hane, James K., Henrissat, Bernard, Holman, Wade H., Kodira, Chinnappa D., Martin, Joel, Oliver, Richard P., Robbertse, Barbara, Schackwitz, Wendy, Schwartz, David C., Spatafora, Joseph W., Turgeon, B. Gillian, Yandava, Chandri, Young, Sarah, Zhou, Shiguo, Zeng, Qiandong, Grigoriev, Igor V., Ma, Li-Jun, and Ciuffetti, Lynda M.
Abstract:: Pyrenophora tritici-repentis is a necrotrophic fungus causal to the disease tan spot of wheat, whose contribution to crop loss has increased significantly during the last few decades. Pathogenicity by this fungus is attributed to the production of host-selective toxins ( HST), which are recognized by their host in a genotype-specific...
Resource Type:: Article
Full Text:: . A path- ogenic isolate that produces two known HSTs was used to assemble a reference nuclear genome

Integration of Evolutionary Theory and Genomics to Understand Processes Involved in Host Adaptation and Divergence in Phytophthora Plant Pathogens

Creator:: Tabima, Javier F.
Abstract:: Modern plant pathology benefits from integrating methods and concepts from evolutionary biology. For example, evolutionary concepts are used to identify and examine species boundaries of plant pathogens, recognize processes underlying pathogen biogeography, identify traits that characterize emerging species, and discover new molecular interactions that originate under processes of selection. In...
Resource Type:: Dissertation
Full Text:: .................................................................................................. 62 Conclusions

ScholarsArchive@OSU

Some crown gall inoculation experiments with special reference to the stomata as possible ports of entry

Studies of the crinkle disease of strawberry, with special reference to its transmission

The Gene Ontology in 2010: extensions and refinements

Finding Our Way through Phenotypes

Studies to facilitate reintroduction of golden paintbrush (Castilleja levisecta) to the Willamette Valley, Oregon

Evolutionary relationships among Pinus (Pinaceae) subsections inferred from multiple low-copy nuclear loci

Quantitative Trait Loci Associated with the Tocochromanol (Vitamin E) Pathway in Barley

Maize Metabolic Network Construction and Transcriptome Analysis

Comparative Genomics of a Plant-Pathogenic Fungus, Pyrenophora tritici-repentis, Reveals Transduplication and the Impact of Repeat Elements on Pathogenicity and Population Divergence

Integration of Evolutionary Theory and Genomics to Understand Processes Involved in Host Adaptation and Divergence in Phytophthora Plant Pathogens

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