Index Catalog // ScholarsArchive@OSU

Emerging semantics to link phenotype and environment

Creator:: Thessen, Anne E., Bunkers, Daniel E., Buttigieg, Pier Luigi, Cooper, Laurel D., Dahdul, Wasila M., Domisch, Sami, Franz, Nico M., Jaiswal, Pankaj, Lawrence-Dill, Carolyn J., Midford, Peter E., Mungall, Christopher J., Ramírez, Martín J., Specht, Chelsea D., Vogt, Lars, Aldo Vos, Rutger, Walls, Ramona L., White, Jeffrey W., Zhang, Guanyang, Deans, Andrew R., Huala, Eva, Lewis, Suzanna E., and Mabee, Paula M.
Abstract:: Understanding the interplay between environmental conditions and phenotypes is a fundamental goal of biology. Unfortunately, data that include observations on phenotype and environment are highly heterogeneous and thus difficult to find and integrate. One approach that is likely to improve the status quo involves the use of ontologies to standardize...
Resource Type:: Article
Full Text:: Accepted 12 November 2015 Published 14 December 2015 Corresponding author Anne E. Thessen, annethessen

Effect of resident epiphytic fungi development of brown rot blossom blight of stone fruits

Creator:: Wittig, Hans P. P.
Abstract:: Antagonistic effects of Epicoccum purpurascens, Aureobasidium pullulans, Trichoderma spp., and Botrytis cinerea on establishment of Monilinia fructicola infections in cherry and peach blossoms were assessed in field and mist chamber studies. Conidia of each fungus were applied to blossoms that were subsequently inoculated with conidia of M fructicola. Mist chamber...
Resource Type:: Masters Thesis
Full Text:: Master of Science in Botany and Plant Pathology presented on January 14, 1992. Title: Effect of Resident

Preliminary Genomic Characterization of Ten Hardwood Tree Species from Multiplexed Low Coverage Whole Genome Sequencing

Creator:: Staton, Margaret, Best, Teodora, Khodwekar, Sudhir, Owusu, Sandra, Xu, Tao, Xu, Yi, Jennings, Tara, Cronn, Richard, Arumuganathan, A. Kathiravetpilla, Coggeshall, Mark, Gailing, Oliver, Liang, Haiying, Romero-Severson, Jeanne, Schlarbaum, Scott, and Carlson, John E.
Abstract:: Forest health issues are on the rise in the United States, resulting from introduction of alien pests and diseases, coupled with abiotic stresses related to climate change. Increasingly, forest scientists are finding genetic/genomic resources valuable in addressing forest health issues. For a set of ten ecologically and economically important native...
Resource Type:: Article
Full Text:: BW BG GA HL RB SM SG WA WO AT|TA 38% 56% 74% 23% 64% 55% 51% 39% 32% 55% AG|GA|CT|TC 57% 39% 14% 42

Comparative Genomics of a Plant-Pathogenic Fungus, Pyrenophora tritici-repentis, Reveals Transduplication and the Impact of Repeat Elements on Pathogenicity and Population Divergence

Creator:: Manning, Viola A., Pandelova, Iovanna, Dhillon, Braham, Wilhelm, Larry J., Goodwin, Stephen B., Berlin, Aaron M., Figueroa, Melania, Freitag, Michael, Hane, James K., Henrissat, Bernard, Holman, Wade H., Kodira, Chinnappa D., Martin, Joel, Oliver, Richard P., Robbertse, Barbara, Schackwitz, Wendy, Schwartz, David C., Spatafora, Joseph W., Turgeon, B. Gillian, Yandava, Chandri, Young, Sarah, Zhou, Shiguo, Zeng, Qiandong, Grigoriev, Igor V., Ma, Li-Jun, and Ciuffetti, Lynda M.
Abstract:: Pyrenophora tritici-repentis is a necrotrophic fungus causal to the disease tan spot of wheat, whose contribution to crop loss has increased significantly during the last few decades. Pathogenicity by this fungus is attributed to the production of host-selective toxins ( HST), which are recognized by their host in a genotype-specific...
Resource Type:: Article
Full Text:: Dothideomycetes is the most diverse class of the phylum Ascomycota and includes a total of 14 orders that are

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

Creator:: Ohm, Robin A., Feau, Nicolas, Henrissat, Bernard, Schoch, Conrad L., Horwitz, Benjamin A., Barry, Kerrie W., Condon, Bradford J., Copeland, Alex C., Dhillon, Braham, Glaser, Fabian, Hesse, Cedar N., Kosti, Idit, LaButti, Kurt, Lindquist, Erika A., Lucas, Susan, Salamov, Asaf A., Bradshaw, Rosie E., Ciuffetti, Lynda, Hamelin, Richard C., Kema, Gert H. J., Lawrence, Christopher, Scott, James A., Spatafora, Joseph W., Turgeon, B. Gillian, de Wit, Pierre J. G. M., Zhong, Shaobin, Goodwin, Stephen B., and Grigoriev, Igor V.
Abstract:: Correction 5 Mar 2013: Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, et al. (2013) Correction: Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi. PLOS Pathogens 9(3): 10.1371/annotation/fcca88ac-d684-46e0-a483-62af67e777bd
Resource Type:: Article
Full Text:: of Public Health, University of Toronto, Toronto, Canada, 14 Laboratory of Phytopathology

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

Creator:: Arighi, Cecilia N., Carterette, Ben, Cohen, K. Bretonnel, Krallinger, Martin, Wilbur, W. John, Fey, Petra, Dodson, Robert, Cooper, Laurel, Van Slyke, Ceri E., Dahdul, Wasila, Mabee, Paula, Li, Donghui, Harris, Bethany, Gillespie, Marc, Jimenez, Silvia, Roberts, Phoebe, Matthews, Lisa, Becker, Kevin, Drabkin, Harold, Bello, Susan, Licata, Luana, Chatr-aryamontri, Andrew, Schaeffer, Mary L., Park, Julie, Haendel, Melissa, Van Auken, Kimberly, Li, Yuling, Chan, Juancarlos, Muller, Hans-Michael, Cui, Hong, Balhoff, James P., Wu, Johnny Chi-Yang, Lu, Zhiyong, Wei, Chih-Hsuan, Tudor, Catalina O., Raja, Kalpana, Subramani, Suresh, Natarajan, Jeyakumar, Cejuela, Juan Miguel, Dubey, Pratibha, and Wu, Cathy
Abstract:: In many databases, biocuration primarily involves literature curation, which usually involves retrieving relevant articles, extracting information that will translate into annotations and identifying new incoming literature. As the volume of biological literature increases, the use of text mining to assist in biocuration becomes increasingly relevant. A number of groups have...
Resource Type:: Article
Full Text:: ct o m e , a n d SG D b g e n e -c e n tr ic : 1 0 fi rs t- ra n k e d a b st ra ct s fo r 4 p ro

Wind farm potential is higher in prime habitat for uncommon soil crust lichens

Creator:: Root, Heather T., McCune, Myrica, and McCune, Bruce
Abstract:: Introduction: Biotic soil crust communities contribute valuable ecosystem services and biodiversity in steppe ecosystems. The uncommon crust lichens Acarospora schleicheri, Fuscopannaria cyanolepra, Rhizocarpon diploschistidina, and Texosporium sancti-jacobi are associated with fine-textured soils along rivers of the Columbia Basin. A. schleicheri and R. diploschistidina indicate late-successional habitat and may serve as...
Resource Type:: Article
Full Text:: –14% of favorable habitats remain in natural vegetation and are considered sites with fair or good

The use of flowering crab apples for the detection of latent viruses in apples

Creator:: Reynolds, James Edward
Abstract:: Recent investigations indicate that several latent viruses of apples exist in common commercial apple stocks, but these viruses and their relationships are incompletely understood. This thesis describes investigations of crab apples as indicators of latent viruses of apples. Eighty-eight varieties and species of crab apples were tested as indicators of...
Resource Type:: Dissertation
Full Text:: M. huphensis when inoculation was delayed 0, 7, 14 and 21 days. Page 5 Transrnission and recovery

Diseases of Rhododendron and Boxwood: Survey and Virulence of Phytophthora Root Rot and Management of Boxwood Blight with Systemic Fungicides

Creator:: Sacher, Gabriel
Abstract:: Diseases can be a substantial threat to woody plant production, a major industry in Oregon. Boxwood (Buxus spp.) and rhododendron (Rhododendron subgenus Rhododendron and Hymenanthes) represent the top two broadleaf evergreen woody plants by farmgate value in Oregon. Historically, Phytophthora root rot has been considered the most destructive disease of...
Resource Type:: Dissertation
Full Text:: with CPS conidia, and rated for percent diseased area over a 14 to 21 day period. Fungicide chemistry

Gene expression and intercellular transport of beet yellows closterovirus examined using tagged virus variants

Creator:: Hagiwara, Yuka
Resource Type:: Masters Thesis
Full Text:: ............................................................................................................................................................... 14 2.3.1 Engineering of the BYV eDNA Clones Tagged by Insertion of GUS ORF

ScholarsArchive@OSU

Emerging semantics to link phenotype and environment

Effect of resident epiphytic fungi development of brown rot blossom blight of stone fruits

Preliminary Genomic Characterization of Ten Hardwood Tree Species from Multiplexed Low Coverage Whole Genome Sequencing

Comparative Genomics of a Plant-Pathogenic Fungus, Pyrenophora tritici-repentis, Reveals Transduplication and the Impact of Repeat Elements on Pathogenicity and Population Divergence

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

Wind farm potential is higher in prime habitat for uncommon soil crust lichens

The use of flowering crab apples for the detection of latent viruses in apples

Diseases of Rhododendron and Boxwood: Survey and Virulence of Phytophthora Root Rot and Management of Boxwood Blight with Systemic Fungicides

Gene expression and intercellular transport of beet yellows closterovirus examined using tagged virus variants

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