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Filtering by: Creator Beardsley, Paul M. Remove constraint Creator: Beardsley, Paul M. Academic Affiliation Electrical Engineering and Computer Science Remove constraint Academic Affiliation: Electrical Engineering and Computer Science

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  • Walking tree methods for biological string matching

    Creator:
    Hsu, Tai C.
    Abstract:
    Approximate string matching is commonly used to align genetic sequences (DNA or RNA) to determine their shared characteristics. In contrast with the standard dynamic programming methods which use local edit distance models, the Walking Tree heuristic method was created to handle non-local changes, e.g., translocations, inversions, and duplications, altogether and...
    Resource Type:
    Dissertation
    Full Text:
    Biological String Matching Abstract approved Paul Cull Approximate string matching is commonly used to

  • A tool for visualizing sequence alignments and associating annotations

    Creator:
    Zhang, Wenpeng
    Abstract:
    Alignment of genomic sequences from different species is becoming an increasingly powerful method in biology, and is being used for many purposes. The result of sequence alignments is a list of pairs of matched locations between the pattern string and the text string. However, without any proper visualization tools to...
    Resource Type:
    Capstone Project
    Full Text:
    ?¾~---=----~--------------- Paul Cull Alignment of genomic sequences from different species is becoming an increasingly

  • Error control techniques for the Z-channel

    Creator:
    Oprisan, Paul
    Abstract:
    The asymmetric nature of bit errors in several practical applications provides grounds for efficient error control techniques. The Z-channel model and special classes of codes like asymmetric error detection codes and t-asymmetric error correcting/d-asymmetric error detecting codes can be successfully used in ARQ protocols for feedback error control enhancement. This...
    Resource Type:
    Dissertation
    Full Text:
    AN ABSTRACT OF THE THESIS OF Paul Oprisan for the degree of

  • Design and Implementation of an Alternating Current Susceptometer for Measuring Brownian Relaxation Time of Magnetic Nanoparticles Suspended in a Liquid Medium

    Creator:
    Paul, Partha Sarathi
    Abstract:
    In this work, an alternating current (ac) magnetic susceptometer is designed and implemented to track the Brownian relaxation time of magnetic nanoparticles that are suspended in a liquid medium. The detection technique based on the Brownian relaxation time of magnetic nanoparticles has found its way in a variety of biosensing...
    Resource Type:
    Capstone Project
    Full Text:
    ABSTRACT OF THE PROJECT OF Partha Sarathi Paul for the degree of Master of Science in Electrical and

  • Applications of Conditional Topic Models to Species Distribution Prediction

    Creator:
    Wilkins, Paul Christopher
    Abstract:
    The topic of species distribution modelling has been on of increasing interest in recent years. As climate change is becoming of even more interest to researchers, more tools are needed to better analyze and predict various climate change scenarios. One particular area of interest is that of species distribution modeling....
    Resource Type:
    Capstone Project
    Full Text:
    Distribution Prediction by Paul Christopher Wilkins A PROJECT submitted to Oregon State University in

  • Executable semantics for PLEXIL : simulating a task-scheduling language in Haskell

    Creator:
    Strauss, Paul J.
    Abstract:
    An interdisciplinary study into the theory of design decisions has yielded a model for tracking design changes in hardware/software systems, but it still needs to be applied to a larger system to test its efficiency at tracking important data. This thesis creates an implementation of PLEXIL, a language in development...
    Resource Type:
    Masters Thesis
    Full Text:
    Paul Strauss for the degree of Master of Science in Computer Science presented on June 8, 2009. Title

  • Ensemble Monte-Carlo planning : an empirical study

    Creator:
    Lewis, Paul
    Abstract:
    Monte-Carlo planning algorithms such as UCT make decisions at each step by intelligently expanding a single search tree given the available time and then selecting the best root action. Recent work has provided evidence that it can be advantageous to instead construct an ensemble of search trees and make a...
    Resource Type:
    Masters Thesis
    Full Text:
    AN ABSTRACT OF THE THESIS OF Paul Lewis for the degree

  • Variational Satisfiability Solving

    Creator:
    Young, Jeffrey M.
    Abstract:
    Over the last two decades, satisfiability and satisfiability-modulo theory (SAT/SMT) solvers have grown powerful enough to be general purpose reasoning engines throughout software engineering and computer science. However, most practical use cases of SAT/SMT solvers require not just solving a single SAT/SMT problem, but solving sets of related SAT/SMT problems....
    Resource Type:
    Dissertation
    Full Text:
    AN ABSTRACT OF THE DISSERTATION OF Jeffrey M. Young for

  • How well do professional developers test with code coverage visualizations? : an empirical study

    Creator:
    Lawrance, Joseph A.
    Abstract:
    Professional software developers do not test code adequately, even though testing tools are widely available. Until developers realize the deficiencies in their tests, inadequate testing of software seems likely to remain a major problem. To support developers writing tests, industry and researchers have proposed systems that visualize “testedness” for end-user...
    Resource Type:
    Masters Thesis
    Full Text:
    ) Committee Member (Paul Cull) Graduate School Representative (Margaret Niess) Date thesis presented April

  • Some contributions to asymmetric error control codes

    Creator:
    Elmougy, Samir
    Abstract:
    In some practical systems, most of the errors are of 1 → 0 type and 0 → 1 errors occur very rarely. In this thesis, first, the capacity of the asymmetric channel is derived. The capacity of the binary symmetric channel (BSC) and the Z-channel can be derived from this...
    Resource Type:
    Dissertation
    Full Text:
    systematic t-unidirectional error detecting codes over Zm, m > 2 is designed. These codes can detect 2