This report is an attempt to address some critical information gaps regarding the effects of dikes and tide gates on coastal ecosystems and fisheries resources. The authors have identified the information needs during their work with landowners, community organizations, and resource management agencies and through a compilation and summary of...
A critical seasonal event for anadromous Chinook salmon (Oncorhynchus tshawytscha) is the time at which adults migrate from the ocean to breed in freshwater. We investigated whether allelic variation at the circadian rhythm genes, OtsClock1a and OtsClock1b, underlies genetic control of migration timing among 42 populations in North America. We...
We conducted a 3-year study of helminth parasites to assess their effect on the lesser prairie-chicken Tympanuchus pallidicinctus. Helminth parasites were found in most of the examined wild prairie chicken carcasses: 95% had eye worm Oxyspirura petrowi, 92% had stomach worm Tetrameres sp., and 59% had caecal worm Subulura sp....
The ability to ascertain gender and age of juvenile grouse is essential for determining gender-specific population age structure and studying timing of reproductive events, respectively. We examined outer rectrix feathers from juvenile Lesser Prairie-Chickens (Tympanuchus pallidicinctus) captured at 30–40 and 50–60 days post-hatching. Blood samples were collected from most chicks...
We used mark-recapture methods to estimate age-specific apparent survival rates for male Lesser Prairie-Chickens (Tympanuchus pallidicinctus), a gamebird of conservation concern. A total of 311 male prairie-chickens (135 yearlings, 176 adults) were captured and banded during a 5-year study in southwest Kansas. Time-since-marking models were used to estimate apparent survival...
Invertebrates are an important food source for grouse chicks, especially within the first 2 weeks of life. Invertebrate abundance is highly patchy and dependent upon herbaceous cover and vegetation structure. We examined the relationship between invertebrate biomass (from sweepnet samples) and habitat structure at lesser prairie-chicken (Tympanuchus pallidicinctus) brood-use and...
We conducted this 2-year study to determine if lesser prairie-chickens Tympanuchus pallidicinctus and ring-necked pheasants Phasianus colchicus used the same habitats where their ranges overlapped in southwestern Kansas. Telemetry locations of 50 transmitter-equipped lesser prairie-chickens and 28 pheasants were used to monitor habitat use by the two species. Additionally, vegetation...
The distribution and range of the greater sage-grouse Centrocercus urophasianus have been reduced by 56% since the European settlement of western North America. Although there is an unprecedented effort to conserve the species, there is still considerable debate about the vegetation composition and structure required for nesting and brood-rearing habitat....
Mortality due to infectious diseases is seldom reported in the Greater Sage-Grouse (Centrocercus urophasianus). A case of necrotic enteritis associated with Clostridium perfringens type A is described in a free-ranging adult male sage-grouse in eastern Oregon. Clostridial enteritis is known to cause outbreaks of mortality in various domestic and wild...
Background: Pinnipeds, including many endangered and declining species, are inaccessible and
difficult to monitor for extended periods using externally attached telemetry devices that are shed
during the annual molt. Archival satellite transmitters were implanted intraperitoneally into four
rehabilitated California sea lions (Zalophus californianus) and 15 wild juvenile Steller sea lions...
Recent comparative studies across sex-changing animals have found that the relative size and age at sex change are strikingly invariant. In particular, 91%–97% of the variation in size at sex change across species can be explained by the simple rule that individuals change sex when they reach 72% of their...
In a 1966 American Naturalist article, G. C. Williams
initiated the study of reproductive effort (RE) with the prediction
that longer-lived organisms ought to expend less in reproduction per
unit of time. We can multiply RE, often measured in fractions of
adult body mass committed to reproduction per unit time,...
Wild-caught juvenile Steller sea lions Eumetopias jubatus (n = 21) were maintained in temporary captivity for up to 12 wk to investigate health, disease, nutrition and behavior. We assessed the effects of captivity on post-release dive behavior and movement of each animal using externally mounted satellite data recorders. Based on...
Resident bull trout (Salvelinus confluentus) may be particularly vulnerable to human related disturbance, however very few studies have focused on resident bull trout populations. The abundance of bull trout is one measure of the strength and potential for persistence of a population. Habitat characteristics may influence resident bull trout abundance...
The development of assays for stress in marine fishes is vital for studying the impacts of bycatch in fisheries and for determining the health of fish being cultured or used in research. This research developed behavioral and physiological assays for stress in juvenile sablefish, Anoplopoma fimbria, a species that comprises...
Stress, including extreme or rapidly changing temperatures, are known to have deleterious effects on fish health and physiology. This thesis examines the combined effects of elevated acclimation temperature and acute handling stress on the number of antibody producing cells, plasma lysozyme concentrations, and the number of pronephric leukocytes in juvenile...
Sex differentiation in fish is a labile process that allows sex inversion in several species. The inherent capacity of fish germ cells to differentiate into oocytes or spermatocytes constitutes a key factor allowing for functional sex inversion. This thesis set out to determine the mechanism involved in steroid-induced sex differentiation...
In the summers of 1998 and 1999, aquatic invertebrate and plant communities were sampled from nineteen springs in the Warner Basin of southeastern Oregon. Across the landscape, these springs exhibited a broad range in water temperature (5-24°C), pH, conductivity, elevation, and gradient. Within a particular spring, water temperature and chemistry...
Effects of spray-dried algae, Schizochytrium sp. and Haematococcus pluvialis, on growth and survival of Manila clam, Tapes philippinarum, spat were determined. Results of the present study showed that these two different spray-dried diets supported clam growth when added as supplements to rations of a mixed diet of the live algae...
Processes of metamorphosis, settlement, and growth were examined in Pacific sanddab
using field studies and otolith microstructure. This flatfish transforms at large sizes, has a
gradual metamorphosis, and settles to a nursery on the middle continental shelf. Eye migration
takes 3 months and "metamorphosis proper" which begins after completion of...
Sex steroids, follicle stimulating hormone (FSH),
luteinizing hormone (LH) and gonadotropin releasing hormone
(GnRH) were measured in monosex and mixed sex populations of
rainbow trout during early development. Steroids declined
following fertilization, increased at hatch, then fell and
remained constant thereafter. Trends toward differences in
steroids between males and females...
Pacific lampreys (Lampetra tridentata) have declined in abundance in the Columbia River Basin. Although, the reasons for the decline are unclear, we suggest that development of hydroelectric dams and habitat alterations in tributaries as the main causes. The available knowledge of life history of Pacific lampreys and status from dam...
Spring chinook salmon, Oncorhynchus tshawytscha, in the Snake River Basin are listed as endangered under the Endangered Species Act. The typical life history of spring chinook salmon is semelparous. An experiment was performed to see if mature male spring chinook salmon parr could be reconditioned after hand-spawning and spawned in...
A series of experiments with Aeromonas salmonicida and infectious
hematopoietic necrosis virus (IHNV) were carried out to determine dynamics of the
spread of infection in chinook salmon (1.2-1.98g) and rainbow trout (1.2-3.1g). It was
found in experiments with A. salmonicida that fish infected by bath immersion became
infectious at 4...
Co-management is considered an alternative approach to fisheries management,
however, not all co-managed fisheries have been successful. Most studies discussing the
success and failure of co-management have emphasized economic and social attributes of
success and failure, such as fishery rights and institutional arrangements. The effect on
co-management of biological characteristics,...
The composition and distribution of fish assemblages was examined in a
floodplain lake system in the Amazon basin. Quantitative samples were
collected during the 1992-1993 flooding season at Marchantaria Island, Solimoes
River. A total of 25,819 specimens representing 8 orders, 30 families, 101
genera and 139 species of fish were...
Seasonally, in 1998 and 1999, I examined spatial and temporal variation in fish assemblages of agricultural, forested, and acid mine drainage tributaries within the Wayne National Forest (WNF) in southern Ohio. Land use and natural disturbance explained patterns in stream fish assemblages. Creek chub and green sunfish were present in...
Large burrowing owl (Aihene cunicularia) populations exist in areas of intensive agriculture in California, and pesticide exposure has been identified as a potential threat to population persistence. I evaluated breeding season use of agricultural fields by adult male owls using radio telemetry, and examined egg contaminant residues to estimate population-level...
Marine ecosystems can be exposed to natural and anthropogenic disturbances that can lead to ecological failures. Marine reserves have been lately suggested to protect marine populations and communities that have been affected by habitat destruction and harvest. This research evaluates the potential role of two marine reserves established in Oregon...
Environmental factors such as chemical contamination can have immunomodulatory effects on the immune response of fish and may be contributing to the decline in salmonid populations by augmenting disease susceptibility. Xenobiotics can interfere with the immune system at several levels of complexity, and different immune cells and processes have variable...
From 1998-2000, laboratory studies were conducted to examine factors that impact saltwater-entry behavior and saltwater preference (SWP) of juvenile chinook salmon, Oncorhynchus tshawytscha. These factors included bacterial kidney disease, stress and the presence of trout, O. mykiss. An additional study investigated the orientation of the startle response of chinook salmon...
The endemic avifauna of Guam and the Mariana Islands represent a unique assemblage of bird species found nowhere else in the world and thus, are of considerable biological and conservation importance. Unfortunately, most of these species are understudied and exist in precariously low populations. The endangered Mariana Common Moorhen (Gallinula...
Despite their inherent importance and utility as ecological examples, island species are among the most endangered and least studied groups. Guam Micronesian Kingfishers (Halcyon cinnamomina cinnamomina) exemplify the plight of insular biota as a critically endangered and understudied island bird that went extinct in the wild before they could be...
Recent emphasis on linkages between essential fish habitat and fish stock productivity has raised concerns about the management of fishing activities such as trawling, which have the potential to impact fish habitat. Knowing specifically where and how intensively trawl effort has occurred over time provides ecologists with the necessary background...
In this dissertation I explore the application of two novel modeling techniques for improving risk analysis of vector-borne disease and discuss their potential use in integrating environmental risk assessment that guides environmental and public health decisions. Techniques for analyzing risk have been considered inadequate due to a lack of understanding...
Wild populations of fish are faced with a multitude of stressors, which may include human interaction, toxins, and disease. Benzo(a)pyrene (BaP), a known carcinogen and immunotoxin, has been reported in the stomach contents of juvenile chinook salmon, Oncorhynchus tshawytscha, in urban waterways. We investigated the impact of chronic dietary exposure...
The pigeon guillemot (Cepphus columba) population in Prince William Sound has failed to recover from declines that occurred both before and after the Exxon Valdez Oil Spill (EVOS). Post-spill studies of pigeon guillemot breeding biology have identified three potential factors limiting recovery: (1) predation on eggs and nestlings; (2) declines...
Understanding how populations within a species interact across various geographic and temporal scales is fundamental to developing appropriate conservation strategies. I examined the geographic variation in genetic and meristic characters of coastal cutthroat trout (Oncorhynchus clarki clarki) based on
approximately 1,400 fish sampled from 54 populations spanning their distributional range...
This thesis focuses upon whether stressful aspects of an organism's environment are reflected by that organism's shape. It presents an application of the powerful thin-plate spline and relative warp methods from morphometric analysis to demonstrate the overall utility of morphometrics in detecting environmental stress in an estuarine flatfish, the English...
In the tropics, widespread deforestation and conversion of primary forests to agricultural and pasture lands has resulted in losses of composition, structure, and functions of forest landscapes. Deforestation in the tropics is typically preformed via slash-and-burn practices; the byproducts from combustion have been identified as the second-highest form of anthropogenically...
The Van Dyke's salamander (Plethodon vandyke,) is a rare species endemic to Washington State. It has been found in cool moist microhabitats along streams, splash zones of waterfalls, and headwater seeps. We explored the association of the Van Dyke's salamander with hydrologic condition, geomorphology, disturbance characteristics, and vegetation structure in...
Greater Sage-Grouse (Centrocercus urophasianus) have experienced declines throughout their range over the last 50 years. Long-term declines in sage-grouse abundance in Nevada and Oregon have been attributed to reduced productivity. From 1995-1997, sage-grouse production on Sheldon National Wildlife Refuge (SNWR), Nevada was greater compared to Hart Mountain National Antelope Refuge...
Palmaria mollis (Pacific dulse) is increasingly being used in land-based marine aquaculture. This work elucidates nutrient, inorganic carbon, light, salinity, and temperature requirements of P. mollis as food for abalone species. Nutrient additions every 5 to 7 days resulted in no significant difference in P. mollis growth compared with daily...
The work presented in this dissertation examines possible
modes of action for growth inhibition by anthropogenic endocrine
disrupting chemicals (EDCs) as well as endogenous hormones
associated with growth in fish. Using the sheepshead minnow (SHM)
(Cyprinodon variegatus) as a model, I developed methods to examine
perturbations in the endocrine axis...
The distribution of Lahontan cutthroat trout Oncorhynchus clarki henshawi was assessed in a high-desert stream in southeastern Oregon where beaver Castor canadensis are abundant. Longitudinal patterns of beaver ponds, habitat, temperature, and Lahontan cutthroat trout age group distribution were identified throughout Willow Creek. Three distinct stream segments were classified based...
With increased resource development on the western Arctic coastal plain of Alaska (especially within the oil extraction industry) it is important to understand the basic life history attributes of whitefish stocks in the region in order to ensure appropriate management. These fish are a crucial part of subsistence harvests for...
The present study investigated the effects of stress and exercise on seawater (SW) adaptation and cortisol dynamics in juvenile steelhead (Oncorhynchus mykiss). To examine the effects of stress, fish acclimated to freshwater (FW) were subjected for 3 hours to confinement stress in FW, and subsequently SW (25 ppt) was introduced...
Monitoring reproductive success, prey species composition, and colony size of marine birds has been proposed as a method of assessing changes in marine systems that are otherwise difficult to sample (Cairns 1987). I measured inter-annual and intra-seasonal variability in reproductive parameters, taxonomic composition of the diet, and adult body condition...
This thesis examined the influence of fall-spawning coho salmon on the density, growth rate, body condition, and survival to outmigration of juvenile coho salmon rearing in beaver ponds on the Copper River Delta, Alaska. During the fall of 1999 and 2000 fish rearing in ponds that received spawning salmon were...
In the present study, the potential of low-melting point lipids, namely methyl palmitate (MP) and menhaden stearine (MS), were studied for delivery of water-soluble materials to fish larvae. Addition of the solid emulsifier, sorbitan monopalmitate (SMP) resulted in higher RE compared to the liquid emulsifier sorbitan sesquioleate (SSO). Additions of...
Low copy number anonymous nuclear loci were used to search for species markers in four species of Klamath Basin suckers. We sequenced 28 randomly chosen loci representing 10,421 bp; 21 loci were similar to sequences in GenBank. Eight fixed sequence differences were found among Klamath species. Locus 120 contained rare...
Evaporation ponds that dispose of agricultural drainwater provide attractive habitat for waterbirds but may result in contaminant exposure that impairs reproduction. I estimated post-hatching survival and evaluated productivity estimates for American avocets (Recurvirostra americana) nesting at evaporation ponds in the Tulare Basin, California from 1991 to 1993. Avocets and Black-necked...
This study was an investigation of lotic macroinvertebrate distribution in northeastern Oregon at two different spatial and biological scales. Examination of assemblages at a limited spatial scale revealed relationships with natural and disturbance gradients and led to questions about distribution of a population at broader spatial scales. In a 16...
Gene expression profiles of tissues and cell-lines can be powerful tools for documenting the genetic response to a particular treatment, such as stressors. However, there is a paucity of information on the genetic stress response in the brain. Therefore, we attempted to profile gene expression in the brain of juvenile...
From 1996 through 1998 I collected mature female black rockfish off Oregon and examined ovaries and otoliths to estimate weekly, age-specific larval production. In all reproductive seasons, older black rockfish extruded larvae earlier in the season, followed by progressively younger fish. Each year, beginning in May, I collected young-of-the-year (YOY)...
Sardines and anchovies are small pelagic fishes that support important commercial fisheries around the world. This project reviews the inverse cyclic behavior in the abundance of these two stocks, which is a striking feature in many regions. In addition, the project used qualitative loop analysis techniques to analyze the feasible...
The purpose of this study was to investigate the survival and movements of newly metamorphosed Northern Red-legged frogs (Rana aurora aurora) as they emigrated from two ephemeral breeding ponds. Quantifying survival and movement rates will be important to our understanding how changes to terrestrial and aquatic systems affect behavior and...
I investigated the relationship between harlequin duck (Histrionicus histrionicus) behavior and lack of recovery from the Exxon Valdez oil spill in Prince William Sound, Alaska. First, I evaluated the hypothesis that harlequin ducks in winter have little flexibility to increase foraging time in response to disturbance because they are constrained...
The present study investigated the neurocrine and neuroendocrine control of locomotor activity, habitat choice, social behavior, and migratory behavior in juvenile chinook salmon (Oncorhynchus tshawytscha). This was achieved by the manipulation of three neurotransmitter systems; serotonin (5-HT), dopamine (DA), y-amino-n-butyric acid (GABA) and the neuropeptide corticotropin-releasing hormone (CRH). Chemicals were...
Black rockfish (Sebastes melanops) is an important marine recreational species throughout the Pacific Northwest. Recent catch data indicate a trend of age-truncation in the black rockfish population off the Oregon coast, with older females rapidly disappearing from the population. In populations with broad age distributions, older fish may contribute disproportionately...
Shellfish growers have expressed interest in developing high-yielding oyster strains through selective breeding. This dissertation has three objectives to help determine the effects of genetic and environmental variation on production traits (body weight, survival, and yield) of Pacific oysters grown in the Pacific Northwest. Objective 1: Determine if relative family...
The purpose of this research was to explore the impact of finfish bycatch on the ocean shrimp Pandalus jordani fishery using two methods. One method looked at the breakage of the shrimp by finfish bycatch in the nets. The other looked at the impact of bycatch on fishing decisions. At-sea...
This study examines the spatial and temporal distribution and life history of the "offshore" component of the Northeastern Pacific spiny dogfish (Squalus acanthias) population. Distribution was examined in relation to latitude, depth, the Columbia River plume and large-scale climate changes. Fishery and survey data indicate that the Northeastern Pacific spiny...
Questions relating to economic performance, biological conservation and variation in resource abundance and harvest of ocean shrimp have led to increasing pressure for management action. Developing effective management policies for this highly variable resource requires a comprehensive understanding of the fishery and marine processes. Important factors in understanding the fishery...
Stock assessments for many U.S. Pacific coast groundfish stocks are developed using the catch-at-age method known as Stock Synthesis. In this work a simulation package was developed and used to evaluate the sensitivity of the Stock Synthesis program. More specifically, the evaluation focused on the impacts of input data errors...
Fishery dependent data--length distributions, sex ratios, maturity schedules, and species composition of landed catches--are necessary for stock assessments. These data are currently collected by state port biologists using a sampling design that randomly selects samples from a small percentage of a very large target population. Sampling programs may need to...
I used a comparative and experimental approach to examine nest habitat selection, reproductive success, and nest site fidelity of burrowing owls (Athene cunicularia) in a large, non-fragmented grassland in southwest California. In 1999, I compared habitat characteristics between nest sites (n = 31) and randomly selected, unoccupied burrows (n =...
Current riparian management objectives in the Pacific Northwest promote both retention of existing conifers and conversion of hardwood-dominated areas to conifers. Although understanding of relationships between riparian vegetation and salmonid prey availability is growing, temporal variation in these relationships is poorly understood. Seasonal fluxes in availability of aquatic and terrestrial...
Genetic diversity of two salmonid species, Dolly Varden (Salvelinus malma) and coastal cutthroat trout (Oncorhynchus clarki clarki) in Prince William Sound, Alaska were examined at multiple spatial scales with three molecular markers. Pleistocene glaciers covered what is now Prince William Sound 8,000- 12,000 years ago and both species colonized the...
The purpose of this study was to understand the influence of organic material and nutrients from spawning salmon and supplemented salmon carcasses on stream food webs. My study objectives were to examine 1) assimilation of salmon-derived nutrients (SDN) by producers and consumers in the food web, 2) epilithic biofilm productivity,...
Although the effects of extrinsic barriers to dispersal have increasingly been shown to
play a large role in the structuring of contemporary genetic diversity, describing the
relationship between landscape structure, stochastic disturbance, and genetic diversity
remains a major challenge. Here, environmental features for 27 barrier-isolated
populations (2,232 individuals) of coastal...
Aquatic insects that emerge out of streams to mate represent a potential energy
flux to terrestrial food webs. The relative success of an individual aquatic adult insect
is whether it survives long enough to produce offspring, i.e. mate and return to the
stream to oviposit eggs. Some characteristics of the...
Recently the National Park Service has proposed raising fence heights to exclude mouflon sheep (Ovis musimon) from conservation areas at Hawai'i Volcanoes National Park. Concern over previous mortality of Hawaiian Petrels (Pterodronia sandwichensis) due to collision with fences prompted this study to quantify the potential effects of raising fence heights...
Culverts and road crossings potentially create barriers that impede or prevent
movement and migration of all life stages of resident and anadromous fish. There
have been very few studies of juvenile salmonid movements through retrofitted
(baffled) culverts in the field. Two separate studies were conducted to assess
juvenile cutthroat trout...
Global warming is progressing more rapidly in polar-regions, and its effects are
more pronounced at high latitudes than in other parts of the globe. Changing ocean
conditions due to climate change are predicted to have dramatic impacts on marine foodwebs.
Seabirds, as upper trophic-level consumers, provide a highly visible and...
Pleuronectid flatfish are generally thought to utilize stereotypical anti-predator behavior to reduce encounters with potential predators, including burial, maintaining a low profile on the bottom, cryptic coloration, and reduced activity. However, a series of laboratory experiments demonstrate significantly different predation rates on juvenile (Age-0) English sole (Parophrys vetulus), northern rock...
The objective of my study was to examine differences in riparian tree and shrub composition associated with adult aquatic emergence and implications for terrestrial spiders in these sites. Seasonal abundance and biomass of adult emergent aquatic insects, riparian arthropod abundances and spider densities were compared between conifer- and hardwood-dominated sites...
Sablefish, Anoplopoma fimbria, is a valuable North Pacific Ocean species caught in several commercial fisheries and is often discarded due to size or catch limits. Managers must account for the mortality of discarded fish to assess fish populations and harvest impacts, yet discard mortality rates of specific fisheries are generally...
Seasonal emergent wetlands in the Pacific Northwest have not been regarded traditionally as fish rearing habitat, despite access to such habitat when river flows overtop riverbanks and connect to the floodplain. As a result, restoration and enhancement projects to remediate for the loss of such wetland habitat are being implemented...
Relationships between the structure and composition of riparian vegetation
with channel morphology were examined in three montane meadow streams in the
headwaters of the Upper Grande Ronde River and North Fork John Day River in the
Blue Mountains, northeast Oregon. Vegetation composition, root biomass, and
channel morphology cross-sections were sampled...
Discrete coldwater patches within warm streams provide potential thermal refuge for coldwater fishes during periods of heat stress. This analysis focused on heterogeneity in stream water temperatures as influenced by local influx of cooler subsurface waters. Using field thermal probes and recording thermistors, we identified and characterized coldwater patches potentially...
Conceptually, the dynamics of wood in streams can be viewed in terms of input and in-channel processes. Input processes are associated with both the riparian (tree fall, bank cutting, windthrow) and upslope forests (mass failures). In-channel processes include log breakage, movement, and decomposition. A mechanistic view of these processes is...
The Middle Fork John Day River is composed of low gradient, alluvial valley
segments separated by constrained, canyon-like reaches, and has a history of multiple
land-uses. These factors can alter the physical and biological structure of streams, and
disrupt the longitudinal river continuum. I examined habitat, fish, macroinvertebrates,
and primary...
I compared hand sampling, two-pass multiple removal sampling, mark-recapture and catchability-based population estimates for the Pacific giant salamander (Dicamptodon tenebrosus) at 22 sites in 11 streams of Cascade Mountains of Oregon. Mark-recapture and catchability-based population estimates were not significantly different (p 0.86). Hand sampling and two-pass multiple removal population estimates...
This study was designed to enhance understanding of factors influencing foraging distribution, diet composition, and overall
reproductive success of Caspian terns (Sterna caspia) nesting on East
Sand Island in the Columbia River estuary. This colony of nearly
10,000 breeding pairs is of concern to regional resource managers
because Caspian terns...
Longitudinal patterns of fish and benthic invertebrate distribution and
habitat use were similar in Thomas Creek, Oregon but clarity of these patterns
differed. I studied fish and aquatic invertebrates simultaneously, at multiple
scales, and used multivariate statistical techniques to compare responses to the
same environmental conditions. Both types of organisms...
Channels that were scoured to bedrock by debris flows provided unique opportunities to calculate the rate of sediment and wood accumulation, to make inferences about processes associated with input and transport of sediment, and to gain insight into the temporal succession of channel morphology following disturbance. In an intensive investigation...