Differential expression (DE) analysis is a key task in gene expression study, because it uncovers the association between expression levels of a gene and the covariates of interest. This dissertation pertains to two particular aspects of DE analysis—identifying stably expressed genes for count normalization and accounting for correlation between DE...
Differential expression (DE) analysis allows us to identify genes that respond differently under varying experimental conditions, therefore granting us an understanding of the molecular basis of phenotypic variation. Following the identification of significantly differentially expressed genes, it is often of the researcher's interest to elucidate hidden patterns or groups in...
In some cases a canopy height model (CHM) is the only available source of forest height information. For these cases it is important to understand the predictive power of CHM data for forest attributes. In this study we examined the use of lidar-derived CHM metrics to predict forest structure classes...
RNA-Sequencing (RNA-Seq) has rapidly become the de facto technique in transcriptome studies. However, established statistical methods for analyzing experimental and observational microarray studies need to be revised or completely re-invented to accommodate RNA-Seq data's unique characteristics. In this dissertation, we focus on statistical analyses performed at two particular stages in...
For the first time we report the results of a survey to determine the presence, seasonal phenology and biological control status of indigenous parasitoid populations utilizing Drosophila suzukii (Matsumura) and Drosophila melanogaster Meigen (Diptera Drosophilidae) as hosts in Trento Province, Northern Italy, and the Willamette Valley, Oregon, USA. Larval and...
Thermal decomposition of several di-p-toluenesulfonylhydrazones
was studied. It was found that the carbene decomposition
of tetramethyl-1,3-cyclobutanedione, di-p-toluenesulfonylhydrazone
gave two products resulting from
rearrangement. One was identified as 2,5-dimethyl-1,3,4-hexatriene. A tentative structure for the second was
proposed. During the course of the study, a more convenient
procedure for thermal decompositions was...
Human operator performance was evaluated using two
types of displays in a simulated ocean surveillance task.
The two types of displays studied included a display in
which position uncertainty information was given (polygon
display) and a display in which uncertainty was not
explicitly shown (line display). The experimental task
was...
In order to synthesize polyethylene by the microreactor with a catalyst, this thesis prepares the chemical coating layers for the reactor channel. There are two layers in the channel: the Phillips catalysts and an antimony-doped tin oxide layer on glass substrate. The Phillips catalyst help to synthesize polyethylene in the...
Understanding sandbar dynamics and variability is integral to developing a predictive
capacity for nearshore flows, sediment transport, morphological change, and
ultimately for determining coastline exposure to damaging storm waves. Along the
high-energy U.S. Pacific Northwest (PNW) coast, sandbars typically dominate the
bathymetry of the active zone. Here we report on...
The Red Dog Mine transports concentrated zinc and lead ore in northwestern Alaska through Cape Krusenstern National monument along a haul road. High metal levels in the moss Hylocomium splendens along the haul road have been attributed to ore dust released during transport. The mine has implemented several pollution abatement...