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Filtering by: Creator Herzing, Andrew A. Remove constraint Creator: Herzing, Andrew A. Committee Member Wong, Weng-Keen Remove constraint Committee Member: Wong, Weng-Keen

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  • Modeling protein structure at atomic resolution

    Creator:
    Berkholz, Donald S.
    Abstract:
    This thesis includes three studies involving different aspects of modeling protein structure. The first study illustrates the levels of insight available from atomic-resolution protein structures. The second study derives general trends of protein geometry from atomic-resolution structures and shows their implications for modeling. The third study creates a model of...
    Resource Type:
    Dissertation
    Full Text:
    : P. Andrew Karplus This thesis includes three studies involving different aspects of modeling

  • Effects of spatial scale and heterogeneity on avian occupancy dynamics and population trends in forested mountain landscapes

    Creator:
    Frey, Sarah J. K.
    Abstract:
    Population trends and patterns in species distributions are the major currencies used to examine responses by biodiversity to changing environments. Effective conservation recommendations require that models of both distribution dynamics and population trends accurately reflect reality. However, identification of the appropriate temporal and spatial scales of animal response, and then...
    Resource Type:
    Dissertation
    Full Text:
    challenges to developing predictive models. In heterogeneous forested mountain landscapes I examined: A

  • Understanding the Application and Benefits of Learning-based Methods in Nuclear Science and Engineering

    Creator:
    Gómez Fernández, Mario Enrique
    Abstract:
    Known as the fourth industrial revolution, digitization is an ongoing trend in all fields, in which various industries are integrating information technologies to support and improve their businesses. Nuclear technology industries have also increased their interest in data-driven methods by leveraging the potential of pattern recognition to identify anomalies and...
    Resource Type:
    Dissertation
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    Engineering Abstract approved: Kathryn A. Higley Known as the fourth industrial revolution, digitization is

  • Interpretable Machine Learning: Applications in Biology and Genomics

    Creator:
    Danaee, Padideh
    Abstract:
    Machine learning (ML) and deep learning (DL) models impact our daily lives with applications in natural language modeling, image analysis, healthcare, genomics, and bioinformatics. The exponential growth of biological sequence data necessitates accompanying advances in computational methods. Although deep learning is highly effective for detecting and classifying biological sequences, challenges...
    Resource Type:
    Dissertation
    Full Text:
    Machine Learning: Applications in Biology and Genomics Abstract approved: David A. Hendrix Machine

  • Revisiting output coding for sequential supervised learning

    Creator:
    Hao, Guohua
    Abstract:
    Markov models are commonly used for joint inference of label sequences. Unfortunately, inference scales quadratically in the number of labels, which is problematic for training methods where inference is repeatedly preformed and is the primary computational bottleneck for large label sets. Recent work has used output coding to address this...
    Resource Type:
    Masters Thesis
    Full Text:
    converting a problem with many labels to a set of problems with binary labels. Models were independently

  • Learning to coordinate in sparse asymmetric multiagent systems

    Creator:
    Dixit, Gaurav
    Abstract:
    Multiagent learning offers a rich framework to address challenging real-world problems such as remote exploration and healthcare coordination, which require autonomous agents to express elaborate interactions. To be effective in such systems, agents must collectively reason about and pursue high-level, long-term, and possibly nebulous objectives while adapting their strategy to...
    Resource Type:
    Dissertation
    Full Text:
    a rich framework to address challenging real-world prob- lems such as remote exploration and

  • A study of methods for fine-grained object classification of arthropod specimens

    Creator:
    Lin, Junyuan
    Abstract:
    Object categorization is one of the fundamental topics in computer vision research. Most current work in object categorization aims to discriminate among generic object classes with gross differences. However, many applications require much finer distinctions. This thesis focuses on the design, evaluation and analysis of learning algorithms for fine- grained...
    Resource Type:
    Masters Thesis
    Full Text:
    Master of Science in Computer Science presented on February 18, 2013. Title: A Study of Methods for

  • Bayesian optimization with empirical constraints

    Creator:
    Azimi, Javad
    Abstract:
    Bayesian Optimization (BO) methods are often used to optimize an unknown function f(•) that is costly to evaluate. They typically work in an iterative manner. In each iteration, given a set of observation points, BO algorithms select k ≥ 1 points to be evaluated. The results of those points are...
    Resource Type:
    Dissertation
    Full Text:
    typically work in an iterative manner. In each iteration, given a set of observation points, BO algorithms

  • Open Set Learning with Counterfactual Images

    Creator:
    Neal, Lawrence W.
    Abstract:
    In open set recognition, a classifier must label instances of known classes while detecting instances of unknown classes not encountered during training. To detect unknown classes while still generalizing to new instances of existing classes, this thesis introduces a dataset augmentation technique called counterfactual image generation. This approach, based on...
    Resource Type:
    Masters Thesis
    Full Text:
    Counterfactual Images Abstract approved: Fuxin Li Xiaoli Fern In open set recognition, a classifier must label

  • New Directions in Search-based Structured Prediction: Multi-Task Learning and Integration of Deep Models

    Creator:
    Ma, Chao
    Abstract:
    This thesis studies the problem of structured prediction (SP), where the agent needs to predict a structured output for a given structured input (e.g., Part-of-Speech tagging sequence for an input sentence). Many important applications including machine translation in natural language processing (NLP) and image interpretation in computer vision can be...
    Resource Type:
    Dissertation
    Full Text:
    ), where the agent needs to predict a structured output for a given structured input (e.g., Part-of-Speech