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Creator:: Di, Yanming, Emerson, Sarah C., Schafer, Daniel W., Kimbrel, Jeffrey A., and Chang, Jeff H.
Abstract:: RNA sequencing (RNA-Seq) is the current method of choice for characterizing transcriptomes and quantifying gene expression changes. This next generation sequencing-based method provides unprecedented depth and resolution. The negative binomial (NB) probability distribution has been shown to be a useful model for frequencies of mapped RNA-Seq reads and consequently provides...
Resource Type:: Article
Full Text:: Yanming Di*, Sarah C. Emerson, Daniel W. Schafer, Jeffrey A. Kimbrel and Jeff H. Chang Higher order

Creator:: Burkhardt, Alyssa, Buchanan, Alex, Cumbie, Jason S., Savory, Elizabeth, A., Chang, Jeff H., and Day, Brad
Abstract:: We re-sequenced the Pseudoperonospora cubensis transcriptome to provide the first extensive transcriptome-wide survey of alternative splicing in an obligate biotrophic pathogen during host infection. The libraries from biological replicates of cucumber leaves infected with Ps. cubensis for 2, 3, 4, and 8 days post inoculation (dpi) were re-sequenced using 100-mer...

Creator:: Burkhardt, Alyssa, Buchanan, Alex, Cumbie, Jason S., Savory, Elizabeth, A., Chang, Jeff H., and Day, Brad
Abstract:: We re-sequenced the Pseudoperonospora cubensis transcriptome to provide the first extensive transcriptome-wide survey of alternative splicing in an obligate biotrophic pathogen during host infection. The libraries from biological replicates of cucumber leaves infected with Ps. cubensis for 2, 3, 4, and 8 days post inoculation (dpi) were re-sequenced using 100-mer...

Creator:: Burkhardt, Alyssa, Buchanan, Alex, Cumbie, Jason S., Savory, Elizabeth, A., Chang, Jeff H., and Day, Brad
Abstract:: We re-sequenced the Pseudoperonospora cubensis transcriptome to provide the first extensive transcriptome-wide survey of alternative splicing in an obligate biotrophic pathogen during host infection. The libraries from biological replicates of cucumber leaves infected with Ps. cubensis for 2, 3, 4, and 8 days post inoculation (dpi) were re-sequenced using 100-mer...

Creator:: Burkhardt, Alyssa, Buchanan, Alex, Cumbie, Jason S., Savory, Elizabeth A., Chang, Jeff H., and Day, Brad
Abstract:: We re-sequenced the Pseudoperonospora cubensis transcriptome to provide the first extensive transcriptome-wide survey of alternative splicing in an obligate biotrophic pathogen during host infection. The libraries from biological replicates of cucumber leaves infected with Ps. cubensis for 2, 3, 4, and 8 days post inoculation (dpi) were re-sequenced using 100-mer...
Resource Type:: Dataset

Creator:: Thomas, William J., Thireault, Caitlin A., Kimbrel, Jeffrey, and Chang, Jeff H.
Resource Type:: Other
Full Text:: Pseudomonas fluorescens Pf0-1 William J. Thomas1,2, Caitlin A. Thireault1, Jeffrey A. Kimbrel1,2, and Jeff H

Creator:: Alvarez, Andres, Creason, Allison L., Thireault, Caitlin A., and Chang, Jeff H.
Abstract:: Many plant-associated Gram-negative bacteria, such a Pseudomonas syringae pv tomato DC3000 (PtoDC3000), use a type III secretion system (T3SS) to establish a host-microbe relationship with compatible plants. The T3SS resembles a molecular injection mechanism that allows the bacteria to deliver type III effectors (T3Es) directly into the cell of the...
Full Text:: . Thireault, Jeff H. Chang Abstract Many plant-associated Gram-negative bacteria, such a Pseudomonas

Creator:: Alvarez, Andres, Creason, Allison L., Thireault, Caitlin A., and Chang, Jeff H.
Abstract:: Many plant-associated Gram-negative bacteria, such a Pseudomonas syringae pv tomato DC3000 (PtoDC3000), use a type III secretion system (T3SS) to establish a host-microbe relationship with compatible plants. The T3SS resembles a molecular injection mechanism that allows the bacteria to deliver type III effectors (T3Es) directly into the cell of the...
Full Text:: type III effectors Andres Alvarez, Allison L. Creason, Caitlin A. Thireault, Jeff H. Chang Abstract

Creator:: Alvarez, Andres, Creason, Allison L., Thireault, Caitlin A., and Chang, Jeff H.
Abstract:: Many plant-associated Gram-negative bacteria, such a Pseudomonas syringae pv tomato DC3000 (PtoDC3000), use a type III secretion system (T3SS) to establish a host-microbe relationship with compatible plants. The T3SS resembles a molecular injection mechanism that allows the bacteria to deliver type III effectors (T3Es) directly into the cell of the...
Resource Type:: Research Paper

Creator:: Araújo, Welington L., Creason, Allison L., Mano, Emy T., Neves, Aline A. C., Minami, Sonia N., Chang, Jeff H., and Loper, Joyce E.
Abstract:: 36 strains of Burkholderia spp. isolated from sugarcane were evaluated for biological control of leaf and pseudobulb necrosis of orchid caused by B. gladioli. 29 of the sugarcane strains suppressed the disease in greenhouse assays. We generated a draft genomic sequence of one suppressive strain, B. seminalis TC3.4.2R3. The genome...

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