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Creator:: Prestat, Emmanuel, David, Maude M., Hultman, Jenni, Myrold, David D., and et al.
Abstract:: A new functional gene database, FOAM (Functional Ontology Assignments for Metagenomes), was developed to screen environmental metagenomic sequence datasets. FOAM provides a new functional ontology dedicated to classify gene functions relevant to environmental microorganisms based on Hidden Markov Models (HMMs). Sets of aligned protein sequences (i.e. ‘profiles’) were tailored to...
Full Text:: Metagenomes): a Hidden Markov Model (HMM) database with environmental focus Prestat, E., David, M. M

Creator:: Prestat, Emmanuel, David, Maude M., Hultman, Jenni, Myrold, David D., and et al.
Abstract:: A new functional gene database, FOAM (Functional Ontology Assignments for Metagenomes), was developed to screen environmental metagenomic sequence datasets. FOAM provides a new functional ontology dedicated to classify gene functions relevant to environmental microorganisms based on Hidden Markov Models (HMMs). Sets of aligned protein sequences (i.e. ‘profiles’) were tailored to...

Creator:: Prestat, Emmanuel, David, Maude M., Hultman, Jenni, Taş, Neslihan, Lamendella, Regina, Dvornik, Jill, Mackelprang, Rachel, Myrold, David D., Jumpponen, Ari, Tringe, Susannah G., Holman, Elizabeth, Mavromatis, Konstantinos, and Jansson, Janet K.
Abstract:: A new functional gene database, FOAM (Functional Ontology Assignments for Metagenomes), was developed to screen environmental metagenomic sequence datasets. FOAM provides a new functional ontology dedicated to classify gene functions relevant to environmental microorganisms based on Hidden Markov Models (HMMs). Sets of aligned protein sequences (i.e. ‘profiles’) were tailored to...
Resource Type:: Article

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