Index Catalog // ScholarsArchive@OSU

Successful Models for Interdisciplinary Graduate Education in the U.S. : Report of the Taskforce on Interdisciplinary Graduate Education Programs

Creator:: Tyler, Brett M.
Abstract:: The Taskforce on Interdisciplinary Graduate Education Programs was given the mission to examine interdisciplinary graduate education programs at a range of institutions around the US, and to identify successful models that could inform the revitalization of interdisciplinary graduate education at Oregon State University. The taskforce examined programs at 29 universities...
Resource Type:: Technical Report
Full Text:: : Brett M. Tyler, Chair (Director, Center for Genome Research and Biocomputing; member, Molecular and

Efficient disruption and replacement of an effector gene in the oomycete Phytophthora sojae using CRISPR/Cas9

Creator:: Fang, Yufeng and Tyler, Brett M.
Abstract:: Phytophthora sojae is an oomycete pathogen of soybean. As a result of its economic importance, P. sojae has become a model for the study of oomycete genetics, physiology and pathology. The lack of efficient techniques for targeted mutagenesis and gene replacement have long hampered genetic studies of pathogenicity in Phytophthora species....
Resource Type:: Article
Full Text:: an effector gene in the oomycete Phytophthora sojae using CRISPR/Cas9 YUFENG FANG1,2 AND BRETT M

Expansion and Divergence of Argonaute Genes in the Oomycete Genus Phytophthora

Creator:: Bollmann, Stephanie R., Press, Caroline M., Tyler, Brett M., and Grunwald, Niklaus J.
Abstract:: Modulation of gene expression through RNA interference is well conserved in eukaryotes and is involved in many cellular processes. In the oomycete Phytophthora, research on the small RNA machinery and function has started to reveal potential roles in the pathogen, but much is still unknown. We examined Argonaute (AGO) homologs...
Resource Type:: Article
Full Text:: : This article was submitted to Evolutionary and Genomic Microbiology, a section of the journal

TylerBrettBotanyPlantPathologyPhylogeneticTranscriptional.pdf

Creator:: Ye, Wenwu, Wang, Yang, Dong, Suomeng, Tyler, Brett M., and Wang, Yuanchao
Abstract:: BACKGROUND: Basic leucine zipper (bZIP) transcription factors are present exclusively in eukaryotes and constitute one of the largest and most diverse transcription factor families. The proteins are responsible for central developmental and physiological processes in plants, animals, and fungi, including the pathogenicity of fungal plant pathogens. However, there is limited...
Full Text:: transcription factor family in Phytophthora sojae Wenwu Ye1, Yang Wang1, Suomeng Dong1, Brett M Tyler2 and

Diverse Evolutionary Trajectories for Small RNA Biogenesis Genes in the Oomycete Genus Phytophthora

Creator:: Bollmann, Stephanie R., Fang, Yufeng, Press, Caroline M., Tyler, Brett M., and Grünwald, Niklaus J.
Abstract:: Gene regulation by small RNA pathways is ubiquitous among eukaryotes, but little is known about small RNA pathways in the Stramenopile kingdom. Phytophthora a genus of filamentous oomycetes, contains many devastating plant pathogens, causing multibillion-dollar damage to crops, ornamental plants, and natural environments. The genomes of several oomycetes including Phytophthora...
Resource Type:: Article
Full Text:: Plant Biotic Interactions, a section of the journal Frontiers in Plant Science Received: 21 January

A Phytophthora sojae Glycoside Hydrolase 12 Protein Is a Major Virulence Factor during Soybean Infection and Is Recognized as a PAMP

Creator:: Ma, Zhenchuan, Song, Tianqiao, Zhu, Lin, Ye, Wenwu, Wang, Yang, Shao, Yuanyuan, Dong, Suomeng, Zhang, Zhengguang, Dou, Daolong, Zheng, Xiaobo, Tyler, Brett M., and Wang, Yuanchao
Abstract:: We identified a glycoside hydrolase family 12 (GH12) protein, XEG1, produced by the soybean pathogen Phytophthora sojae that exhibits xyloglucanase and β-glucanase activity. It acts as an important virulence factor during P. sojae infection but also acts as a pathogen-associated molecular pattern (PAMP) in soybean (Glycine max) and solanaceous species,...
Resource Type:: Article

Sequence verification of synthetic DNA by assembly of sequencing reads

Creator:: Wilson, Mandy L., Cai, Yizhi, Hanlon, Regina, Taylor, Samantha, Chevreux, Bastien, Setubal, João C., Tyler, Brett M., and Peccoud, Jean
Abstract:: Gene synthesis attempts to assemble user-defined DNA sequences with base-level precision. Verifying the sequences of construction intermediates and the final product of a gene synthesis project is a critical part of the workflow, yet one that has received the least attention. Sequence validation is equally important for other kinds of...
Resource Type:: Article
Full Text:: Chevreux2, João C. Setubal1, Brett M. Tyler3 and Jean Peccoud1,4,* 1Virginia Bioinformatics Institute

FisterTwoTheobromaCacaoSupplement.pdf

Creator:: Fister, Andrew S., O'Neil, Shawn T., Shi, Zi, Zhang, Yufan, Tyler, Brett M., Guiltinan, Mark J., and Maximova, Siela N.
Abstract:: Understanding the genetic basis of pathogen susceptibility in various crop plants is crucial to increasing the stability of food, feed, and fuel production. Varietal differences in defence responses provide insights into the mechanisms of resistance and are a key resource for plant breeders. To explore the role of salicylic acid...
Full Text:: selectable marker gene (NPTII-‐A)(De-‐ Block et al. 1984), the NOS promoter

Genetic resources for advanced biofuel production described with the Gene Ontology

Creator:: Torto-Alalibo, Trudy, Purwantini, Endang, Lomax, Jane, Setubal, João C., Mukhopadhyay, Biswarup, and Tyler, Brett M.
Abstract:: Dramatic increases in research in the area of microbial biofuel production coupled with high-throughput data generation on bioenergy-related microbes has led to a deluge of information in the scientific literature and in databases. Consolidating this information and making it easily accessible requires a unified vocabulary. The Gene Ontology (GO) fulfills...
Resource Type:: Article
Full Text:: , João C. Setubal 2,4 , Biswarup Mukhopadhyay1,2,5 and Brett M. Tyler 2,6* 1 Department of Biochemistry

TylerBrettGRBGeneticResourcesMethane.pdf

Creator:: Purwantini, Endang, Torto-Alalibo, Trudy, Lomax, Jane, Setubal, João C., Tyler, Brett M., and Mukhopadhyay, Biswarup
Abstract:: Methane (CH₄) is a valuable fuel, constituting 70–95% of natural gas, and a potent greenhouse gas. Release of CH₄ into the atmosphere contributes to climate change. Biological CH₄ production or methanogenesis is mostly performed by methanogens, a group of strictly anaerobic archaea. The direct substrates for methanogenesis are H₂ plus...
Full Text:: , Jane Lomax2, João C. Setubal3,4, Brett M. Tyler4,5 and Biswarup Mukhopadhyay1,4,6* 1 Department of

ScholarsArchive@OSU

Successful Models for Interdisciplinary Graduate Education in the U.S. : Report of the Taskforce on Interdisciplinary Graduate Education Programs

Efficient disruption and replacement of an effector gene in the oomycete Phytophthora sojae using CRISPR/Cas9

Expansion and Divergence of Argonaute Genes in the Oomycete Genus Phytophthora

TylerBrettBotanyPlantPathologyPhylogeneticTranscriptional.pdf

Diverse Evolutionary Trajectories for Small RNA Biogenesis Genes in the Oomycete Genus Phytophthora

A Phytophthora sojae Glycoside Hydrolase 12 Protein Is a Major Virulence Factor during Soybean Infection and Is Recognized as a PAMP

Sequence verification of synthetic DNA by assembly of sequencing reads

FisterTwoTheobromaCacaoSupplement.pdf

Genetic resources for advanced biofuel production described with the Gene Ontology

TylerBrettGRBGeneticResourcesMethane.pdf

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