The filamentous fungus Neurospora crassa responds to light in complex ways. To thoroughly
study the transcriptional response of this organism to light, RNA-seq was used to analyze capped and
polyadenylated mRNA prepared from mycelium grown for 24 hr in the dark and then exposed to light for
0 (control) 15,...
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Characterization of Light-Regulated
Genes in Neurospora crassa
Cheng Wu,* Fei Yang,* Kristina M. Smith,† Matthew
Mixia osmundae (Basidiomycota, Pucciniomycotina) represents a monotypic class containing
an unusual fern pathogen with incompletely understood biology. We sequenced and analyzed
the genome of M. osmundae, focusing on genes that may provide some insight into its
mode of pathogenicity and reproductive biology.
Mixia osmundae has the smallest plant pathogenic basidiomycete...
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error correction by aligning the reads back to each
contig with Burrows-Wheeler Aligner (Li & Durbin
Histone deacetylase (HDAC) inhibitors are undergoing clinical trials as anticancer agents, but some exhibit resistance mechanisms
linked to anti-apoptotic Bcl-2 functions, such as BH3-only protein silencing. HDAC inhibitors that reactivate BH3-only family
members might offer an improved therapeutic approach. We show here that a novel seleno-α-keto acid triggers global histone...
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contractility. FASEB J 2005; 19: 966–968.
22. Karolczak-Bayatti M, Sweeney M, Cheng J, Edey L, Robson SC
Sodium-ion batteries are emerging as a highly promising technology for large-scale energy
storage applications. However, it remains a significant challenge to develop an anode with
superior long-term cycling stability and high-rate capability. Here we demonstrate that the
Na⁺ intercalation pseudocapacitance in TiO₂/graphene nanocomposites enables high-rate
capability and long cycle life...
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materials have been observed in several
TiO2-Li cells43,44. Similar effects on the average sodiation
A new functional gene database, FOAM (Functional
Ontology Assignments for Metagenomes), was developed
to screen environmental metagenomic sequence
datasets. FOAM provides a new functional
ontology dedicated to classify gene functions relevant
to environmental microorganisms based on Hidden
Markov Models (HMMs). Sets of aligned protein
sequences (i.e. ‘profiles’) were tailored to...
Non-structural carbohydrates (NSC) in plant tissue are frequently quantified to make inferences about plant responses to environmental conditions. Laboratories publishing estimates of NSC of woody plants use many different methods to evaluate NSC. We asked whether NSC estimates in the recent literature could be quantitatively compared among studies. We also...
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for forests
( Hoch et al. 2002, Hoch and Körner 2003, Handa et al. 2005,
Li et al. 2008, Fajardo
Emerging application areas such as air pollution in megacities, wind energy, urban security, and operation of unmanned aerial vehicles have intensified scientific and societal interest in mountain meteorology. To address scientific needs and help improve the prediction of mountain weather, the U.S. Department of Defense has funded a research effort—the...
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. 3),
with ES5 at the foothill],
with a total of 30 sonics,
Krypton hygrometers, or
LI-COR
Repetitive sequences present a challenge for genome sequence assembly, and highly similar segmental duplications may
disappear from assembled genome sequences. Having found a surprising lack of observable phenotypic deviations and
non-Mendelian segregation in Arabidopsis thaliana mutants in SEC10, a gene encoding a core subunit of the exocyst
tethering complex, we...
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–453.
8. Lamesch P, Berardini TZ, Li D, Swarbreck D, Wilks C, et al. (2012) The
Arabidopsis
Bacterioplankton of the SAR11 clade are the most abundant microorganisms in marine systems,
usually representing 25% or more of the total bacterial cells in seawater worldwide. SAR11 is divided
into subclades with distinct spatiotemporal distributions (ecotypes), some of which appear to be
specific to deep water. Here we examine the...
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planktonic
bacteria. Appl Environ Microbiol 63: 63–70.
Fu L, Niu B, Zhu Z, Wu S, Li W. (2012). CD-HIT
The aim of this work is to review current knowledge relating the established cancer hallmark, sustained cell proliferation
to the existence of chemicals present as low dose mixtures in the environment. Normal cell proliferation is under tight
control, i.e. cells respond to a signal to proliferate, and although most cells...