The extensive literature in biomedical ethics on physician-assisted death has represented the debate to involve three parties with significant interests. First, there are arguments regarding the legitimacy of terminally patients seeking to exercise an expanded right of self-determination. Furthermore, questions have been posed regarding the compatibility of a patient request...
The most frequent cause of pseudomembranous colitis is Clostridium difficile (C. difficile) infection. This type of colitis is characterized by an endoscopic pattern of numerous small, yellowish or whitish plaques diffusely distributed, which typically compromises the rectum extending to proximal colon. Occasionally, the pseudomembranes compromise only the transverse or right...
We derive the fundamental solution of the linearized problem of the motion of a viscous uid around a rotating body when the axis of rotation of the body is not parallel to the velocity of the uid at infinity.
Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts...
Both the structure and composition of naturally generated early-seral forests in the Pacific Northwest (PNW) can be profoundly different than that of more developed forest seres, especially in the period after a major disturbance but before conifers re-develop a closed canopy. While it is reasonable to suggest that the unique...
Distributed Version Control Systems (DVCS) have seen an increase in popularity relative to traditional Centralized Version Control Systems (CVCS). Yet we know little on whether developers are benefitting from the extra power of DVCS. Without such knowledge, researchers, developers, tool builders, and team managers are in the danger of making...
Improving existing and developing completely new products is an important part of maintaining a healthy business. This document outlines key principles of new product development, illustrated through the activities of a small sawmilling company.
The chemical kinetics ODEs arising from operator-split reactive-flow simulations were solved on GPUs using explicit integration algorithms. Nonstiff chemical kinetics of a hydrogen oxidation mechanism (9 species and 38 irreversible reactions) were computed using the explicit fifth-order Runge–Kutta–Cash–Karp method, and the GPU-accelerated version performed faster than single- and six-core CPU...
Presents pesticide and herbicide application rates and recommendations, by tree growth stage, for pests that infect fruit trees. Covers apples, pears, and cherries. Provides (1) spray program for nutrients; (2) dilutions table for wettable powder and liquid products; (3) natural enemy impact guide for tree fruit pesticides; (4) illustrated bud...
Species invasions have a range of negative effects on recipient ecosystems, and many occur at a scale and magnitude that preclude complete eradication. When complete extirpation is unlikely with available management resources, an effective strategy may be to suppress invasive populations below levels predicted to cause undesirable ecological change. We...
Objective: To examine the prevalence and identify correlates of food insecurity among students attending a rural university in Oregon. Methods: Cross-sectional non-probability survey of 354 students attending a midsize rural university in Oregon during May 2011. Main outcome was food insecurity measured using the USDA Household Food Security Survey Module:...
In advanced integrated circuit (IC) processes, the metal fill inserted to meet foundry imposed density requirements degrades the performance of interconnects and passive components which ultimately affects the overall circuit performance. Accounting for this degradation through electromagnetic and equivalent circuit modeling is becoming a critical aspect of IC design. However,...
Submarine volcanic eruptions can result in both real and apparent changes in marine algal communities, e.g., increases in phytoplankton biomass and/or growth rates that can cover thousands of square kilometers. Satellite ocean color monitoring detects these changes as increases in chlorophyll and particulate backscattering. Detailed, high resolution analysis is needed...
Bale Mountains National Park (BMNP) is currently considered the most important conservation area in Ethiopia. BMNP was established over forty years ago to protect Ethiopian endemic fauna and to preserve an array of habitat types including Afroalpine, Afromontane, and the second largest natural humid forest (Harenna forest) left in Ethiopia....
Existing pressure sensitive adhesives (PSAs) are mostly based on petrochemicals. In this study, a novel PSA based on a renewable material, methyl oleate, was prepared and characterized. Methyl oleate was first epoxidized to form epoxidized methyl oleate that was subsequently hydrolyzed and acidified to form epoxidized oleic acid (EOA) which...
BCL11B is a transcriptional regulatory protein that plays essential roles during mouse embryonic development. BCL11B is expressed and functions in the immune and nervous systems as well as within ectodermal organs. Multiple studies have characterized the roles of BCL11B in T cells, brain, and skin. However, very little is known...
Novel donor-type graphite intercalation compounds (GICs) containing tetra-n-alkylammonium (TAA) cations have been synthesized by using both ion-exchange and electrochemical methods. Structural and compositional data of the resulting TAA-GICs are investigated by using powder X-ray diffraction (PXRD), one-dimensional electron density calculations, thermogravimetric and elemental analyses, and capillary zone electrophoresis (CZE). A...
Domestic dogs’, Canis familiaris, responsiveness to human action has been a topic of scientific interest for almost two decades. However, are all breeds of domestic dog equally prepared to succeed on humanguided object-choice tasks? In the current study we compared three breeds of dog with distinct predatory motor pattern sequences...
"Exploring the Landscape: Continuing to Make a Difference as an Emeritus Faculty" is a poster presentation sharing the journey of Dr. Jean Moule, OSU Associate Professor Emeritus, since her retirement in 2010. The poster also shows the recently formed relationship between Moule and Natalia Fernandez, OSU's Oregon Multicultural Librarian.
Identification of new molecular targets for the treatment of breast cancer is an important clinical goal, especially for triple-negative breast cancer, which is refractory to existing targeted treatments. The aryl hydrocarbon receptor (AhR) is a ligand-activated transcription factor known primarily as the mediator of dioxin toxicity. However, the AhR can...
This planning guide is the outcome of an international collaboration of researchers and practitioners/field managers working in communities at risk of wildfire in three countries. Initially, the team of social scientists from Australia, Canada, and the United States utilized the collective research literature to examine factors that influence stakeholder trust....
Spatiotemporal planning involves making choices at multiple locations in space over some planning horizon to maximize utility and satisfy various constraints. In Forest Ecosystem Management, the problem is to choose actions for thousands of locations each year including harvesting, treating trees for fire or pests, or doing nothing. The utility...
The rising demand on freshwater resources emphasizes the benefit of biogeochemical processes that maintain clean water by removing pollutants such as excess nitrogen. The most sensitive step in the removal of nitrogen from waterways is the oxidation of ammonia, a part of nitrification, which is carried out by ammonia oxidizing...
INTRODUCTION: Between 2004 and 2010, the number of home births in the United States rose by 41%, increasing the need for accurate assessment of the safety of planned home birth. This study examines outcomes of planned home births in the United States between 2004 and 2009.
METHODS: We calculated descriptive...
INTRODUCTION: In 2004, the Midwives Alliance of North America's (MANA's) Division of Research developed a Web-based data collection system to gather information on the practices and outcomes associated with midwife-led births in the United States. This system, called the MANA Statistics Project (MANA Stats), grew out of a widely acknowledged...
Carbon Nanotubes are a unique family of nanostructures that have shown remarkable promise for mechanical, electrical, and optical applications. Fundamentally similar to the earlier discovered Buckminsterfullerene (C₆₀), carbon nanotubes are hollow cylinders formed from a single sheet of carbon atoms. The research presented in this dissertation investigates several carbon nanotube...
The influence of the physical environment on organisms has long been a subject of ecological research. But, the complex drivers of environmental variation, and the multiple scales at which this can occur, make studying this topic a difficult challenge. In rocky intertidal habitats, oceanographic- and climate-scale variability influence benthic communities...
Maintaining variation in software is a difficult problem that poses serious challenges for the understanding and editing of software artifacts. Although the C preprocessor (CPP) is often the default tool used to introduce variability to software, because of its simplicity and flexibility, it is infamous for its obtrusive syntax and...
Subduction zone earthquake and tsunami hazards affect tens of millions worldwide and the recurrence of these disasters can be evaluated with paleoseismic techniques, because earthquake cycles (and their supercycles) typically span many millennia. In these three chapters, I discuss a suite of analyses I use to evaluate the sedimentary record...
Vessel disasters (e.g., vessels capsizing, sinking, grounding, burning) are the leading contributor to occupational fatalities in the U.S. commercial fishing industry. Vessel disasters are a vital area to target prevention efforts, yet it has been suggested that results produced in scientific studies are not efficiently exchanged between researchers, regulatory bodies...
Analogous to ocean surface waves, waves in the ocean interior also experience steepening, breaking, and dissipation as they approach the coastline. Much less is known about this internal beach. In this work, extensive moored Acoustic Doppler Current Profiler and temperature/salinity data together with optical remote sensing are combined to describe...
This publication describes raspberry cultivars, including red, yellow, black, and purple types. It explains the difference between floricane-fruiting and primocane-fruiting cultivars, includes information on commercial value, and identifies which cultivars work well for home gardens.
This publication describes blueberry cultivars, including northern highbush, southern highbush, rabbiteye, lowbush, and half-high types. It includes information on commercial value and identifies which cultivars work well for home gardens.
This publication describes strawberry cultivars, including June-bearing, everbearing, and day-neutral types. It includes information on commercial value and identifies which cultivars work well for home gardens.
This revision updates information on susceptibility of grapevines to several common herbicides used in agricultural production. Color photos illustrate injury symptoms. The publication provides practical measures that vineyard owners and their neighbors can take to reduce the risk of herbicide drift and injury to grapes.
Humpback whales (Megaptera novaeangliae) are vocal baleen whales that exhibit complex social interactions that vary spatially and seasonally. Across their range, humpback whales produce a wide array of vocalizations including ‘song’, foraging vocalizations, and a range of vocalizations known as social calls -- unclassified non-song vocalizations. This study investigates the...
This publication reviews the growth stages of grapes. For each growth stage (or group of growth stages), the document lists the more effective pesticides used to control insects, weeds, and disease, their rates, and application timing for Oregon grape growers. It also covers the effectiveness of various fungicides for control...
Short-term freeway traffic speed prediction is essential to improving mobility and safety. It has been a challenging, yet unresolved issue. Traffic speed prediction can be applied to enhance the intelligent freeway traffic management and control for applications as operational and regulation planning. For example, with more reliable traffic speed prediction,...
This thesis describes the development of a new enantioselective synthetic method employing chiral cis-2,5-diaminobicyclo[2.2.2]octane-based organometallic catalysts. The significance of this new method to organic synthesis is illustrated with preparation of enantioenriched products that are transformed to important pharmaceutical agents. Chapter 1 provides a brief historical overview of asymmetric catalysis, especially...
The aryl hydrocarbon receptor (AhR) is a ligand-activated transcription factor that plays multiple roles in regulation of immune and inflammatory responses. The ability of certain AhR ligands to induce regulatory T cells (Tregs) has generated interest in developing AhR ligands for therapeutic treatment of immune-mediated diseases. To this end, we...
The surgery technique of Gromov and Lawson may be used to construct families of positive scalar curvature metrics which are parameterised by Morse functions. This has played an important role in the study of the space of metrics of positive scalar curvature on a smooth manifold and its corresponding moduli...
Stabilization of the Yaquina Bay shoreline along the northeastern edge of the Hatfield Marine Science Center (HMSC) campus became necessary to halt erosion that threatened both HMSC critical infrastructure (seawater storage tank) and public access to the HMSC Nature Trail. A Dynamic Revetment (gravel beach) was installed in November, 2011...
The genus Phytophthora contains some of the most destructive pathogens of forest trees, including the most destructive pathogen of alder in recent times, Phytophthora alni. Alder trees were reported to be suffering from canopy dieback in riparian ecosystems in western Oregon, which prompted a survey of alder health and monitoring...
There is no doubt that adhesive penetration plays an important role in wood bondline joint performance and durability; yet, to date there is no direct experimental evidence linking penetration depth with bond performance. This is, in part, because adhesive penetration is commonly assessed with various 2D microscopy techniques that are...
Surface transient storage (STS) and hyporheic transient storage (HTS) have functional significance in stream ecology and hydrology. Both provide refugia for aquatic communities and their longer mean residence times (compared to the main flow) increase the potential for biogeochemical reactions that can improve water quality. As STS and HTS have...
Due to the wide applications of inkjet printers in industry and our daily life, characterization of liquid droplets from inkjet printers, particularly the behaviors of the impact and diffusion of the droplets on the surface of and inside porous medium is of great interest. One conventional characterization method uses high-speed...
Academic libraries play an increasingly important role in providing research data services to faculty and students at universities around the world. One of the major challenges for libraries involves the appropriate scoping of services to meet a broad range of researcher needs. Oregon State University Libraries have developed a model...
Guidelines for feeding small flocks of meat-type chickens. Including a discussion of standard versus organic feeds, mixing feeds at home, and alternatives to traditional ingredients.
The production of hydrogen has been one of the most heavily studied, energy related fields over the past half century, yet few methods are commercially or economically viable and none are currently sustainable. Of those aiming at the sustainable production of hydrogen using renewable resources, perhaps the most widely studied...
Academic librarianship has an intimate association with narratives and stories in their traditional role in curating, caring for, and making collections accessible. Librarians also experience the intricacies and challenges of narrative inquiry through the qualitative research they undertake, oral histories they gather, reflective teaching practices they facilitate, and oral-traditions they...
Prescribed fire is commonly applied world-wide as a tool for enhancing habitats and altering resource-selection patterns of grazing animals. A scientific basis for this practice has been established in some ecosystems but its efficacy has not been rigorously evaluated on mesic sagebrush steppe. Beginning in 2003, resource-selection patterns of beef...
Patterns of salmon distribution throughout a riverscape may be expected to change over time in response to environmental conditions and population sizes. Changing patterns of use, including identification of consistently occupied locations, are informative for conservation and recovery planning. We explored interannual patterns of distribution by juvenile Coho Salmon Oncorhynchus...
Complex systems science provides a transdisciplinary framework to study systems characterized by (1) heterogeneity, (2) hierarchy, (3) self‐organization, (4) openness, (5) adaptation, (6) memory, (7) non‐linearity, and (8) uncertainty. Complex systems thinking has inspired both theory and applied strategies for improving ecosystem resilience and adaptability, but applications in forest ecology...
We used serology and muscle digestion to test black bears (Ursus americanus) from western Oregon, USA, for Trichinella. Results indicate black bears in Oregon are not part of a sylvatic cycle for Trichinella, and risk of human exposure to Trichinella larvae from eating black bear meat from Oregon appears low.
We review how urbanization alters aquatic ecosystems, as well as actions that managers can take to remediate urban waters. Urbanization affects streams by fundamentally altering longitudinal and lateral processes that in turn alter hydrology, habitat, and water chemistry; these effects create physical and chemical stressors that in turn affect the...
Sclerotinia crown rot, caused by Sclerotinia minor and S. sclerotiorum,
is a disease of pyrethrum in Australia that may cause substantial decline
in plant density. The spatiotemporal characteristics of the disease
were quantified in 14 fields during three growing seasons. Fitting the
binary power law to disease incidence provided slope...
Tree-ring characteristics are commonly used to reconstruct climate variables, but divergence from the assumption of a single biophysical control may reduce the accuracy of these reconstructions. Here, we present data from bur oaks (Quercus macrocarpa Michx.) sampled within and beyond the current species bioclimatic envelope to identify the primary environmental...
SAR11 Alphaproteobacteria are the most abundant aerobic chemoheterotrophs in ocean surface waters. Previous studies have indicated SAR11 cells play an important role in marine carbon cycling and consume up to half of some common dissolved organic compounds, such as amino acids. During sequencing of the first SAR11 genome, genes for...
A more quantitative understanding of peptide entrapment and elution from otherwise protein-repellent polyethylene oxide (PEO) brush layers will provide direction for development of new strategies for drug storage and delivery. Here we describe criteria for peptide integration and structural change within the PEO brush, and discuss the reversibility of peptide...
This research effort considers bicyclist’s left-turn behavior at roadway intersections with varying levels of traffic control; specifically, seeking to address the question where do bicyclists look to acquire information. A demographic comparison was made to determine if factors such as gender or experience influence the nature of how a bicyclist...
DNA segments in the fungus Fusarium graminearum were identified as possible genes encoding for chromodomain proteins (CDPs), and targeted for genetic manipulation. Targeted single-gene deletion strains, as wells as GFP-S tag fusion strains, were generated from wildtype F. graminearum protoplasts, and verified strains were screened for phenotypic differences, such as...
Central Oregon has attracted attention as a potential location for a biomass industry based on a locally fixed source of western juniper (Juniperus occidentalis Hook) feedstock. This study identifies a supply of juniper from private lands to determine how much of the available juniper is economically supplied at alternative prices...
The purpose of this study was to explore the issues involved with implementing and using pedagogies of engagement in community college STEM courses. The rationale for this study was based on current and emerging STEM education policy directives calling for an updated approach to teaching undergraduates, focused on student engagement,...
This dissertation focuses on the behavior of security returns around certain events that occurred in the Saudi stock market. In the first study, we measure and analyze the reaction of security returns around a major horizontal merger that occurred in the banking industry in Saudi Arabia. The objective of this...
Climate change is arguably the greatest challenge to conservation of our time. Most vulnerability assessments rely on past and current species distributions to predict future persistence but ignore species’ abilities to disperse through landscapes, which may be particularly important in fragmented habitats and crucial for long-term persistence in changing environments....
Past tracking studies of marine animals have primarily targeted adults, biasing our understanding of at-sea habitat use toward older life stages. Anthropogenic threats persist throughout the at-sea ranges of all life stages and it is therefore of interest to population ecologists and managers alike to understand spatiotemporal distributions and possible...
The fish early-life stage (FELS) test (Organisation for Economic Co-operation and Development [OECD] test guideline 210) is the primary test used internationally to estimate chronic fish toxicity in support of ecological risk assessments and chemical management programs. As part of an ongoing effort to develop efficient and cost-effective alternatives to...
Amorphous metal thin films (AMTFs) are of potential use for metal-insulator-metal (MIM) tunnel diode applications due to their ultra-smooth surfaces, a consequence of their amorphous microstructure. The objective of this thesis is to design a thermally-stable AMTF capable of maintaining MIM tunnel diode performance after a post-deposition anneal in excess...
Large carnivores face serious threats and are experiencing massive declines in their populations and geographic ranges around the world. We highlight how these threats have affected the conservation status and ecological functioning of the 31 largest mammalian carnivores on Earth. Consistent with theory, empirical studies increasingly show that large carnivores...
Understanding local and geographic factors influencing species distributions is a prerequisite for conservation planning. Our objective in this study was to model local and geographic variability in elevations occupied by native and nonnative trout in the northwestern Great Basin, USA. To this end, we analyzed a large existing data set...
Large river plumes modify coastal environments and can impact production across multiple trophic levels. From 1999 to 2009, the
assemblages of forage fish, predator fish, and other pelagic nekton were monitored in coastal waters associated with the Columbia
River plume. Surveys were conducted at night to target vertically migrating species,...
In the last decade, the California Current Large Marine Ecosystem has experienced a trend of increased severity of upwelling-driven coastal hypoxia. This thesis strove to examine the potential upper trophic level impacts of moderate and severe hypoxia in the CCLME. Initially I conducted a literature review of Pacific harbor seal...
IC designers are continuously facing the challenges from reduced CMOS feature sizes and supply voltages. ADCs that deliver satisfactory resolutions/speeds while utilizing the state-of-the-art technologies to save power are in high demand. The analog circuits are more and more assisted by various digital calibration techniques to get boosted performances. This...
The potential for electric energy generation from ocean waves is substantial and much research is being conducted on the conversion process as a renewable, grid-connected, power source. Some of the same attributes that make wave energy harvesting attractive as a grid-connected source also make it attractive as a remote, or...
Easy-first, a search-based structured prediction approach, has been applied to many NLP tasks including dependency parsing and coreference resolution. This approach employs a learned greedy policy (action scoring function) to make easy decisions first, which constrains the remaining decisions and makes them easier. This thesis studies the problem of learning...
Research indicates that enduring interparental conflict before, during, and after divorce has negative effects on children. Parental conflict can be reduced utilizing alternative dispute resolution (ADR) processes such as mediation and collaborative divorce. The purpose of this dissertation was to produce two manuscripts examining the role of the child specialist...
Multiple drug resistance (MDR) Tuberculosis (TB), leads to increased use of “second-line” drugs; one of the most effective is ethionamide (ETA). ETA is a prodrug metabolized by a mycobacterial flavin-containing monooxygenase (EtaA) as well human flavin-containing monooxygenases (FMOs). Of the five functional FMOs of humans, FMOs 1, 2, and 3...
Sensors find a variety of applications in portable electronics, automotive and biomedical solutions. The demand for low power and high dynamic range makes the design of digital sensor readout circuits quite challenging. Traditionally, these circuits are realized using amplifiers with passive feedback or precision analog comparators which are power hungry...
Photobiological hydrogen production -- the use of photosynthesis to split water into hydrogen and oxygen -- presents an opportunity for efficient and large-scale solar biofuel development. One of the major challenges in this area is competition for reductant between the hydrogen-evolving hydrogenase enzyme and other metabolic pathways. In this work...
Charge transport in a semiconductor structure with heterojunction is described by a multiscale partial differential equation model. This model can be used, e.g., for the design of more efficient solar cells. Phenomena at the heterojunction must be resolved at the angstrom scale while the size of the device is that...
Macrosomia is a medical term describing a new baby born with an excessive birth weight (greater than 4000g). Fetal macrosomia may lead to both pregnancy complications, and increased risk of mother's and baby's health problems after birth. But the potential complications may be mitigated by a cesarean delivery. As such,...
Since the introduction of lean manufacturing by Toyota and publication by Womack and Jones, organizations have realized sizeable gains through lean process improvement. The spread of lean practices across organizations and industries – from manufacturing to healthcare and construction – requires adjustments of the lean process and, in the case...
Knot Theory: In Imitation of Lewis Thomas is a collection of 14, 1200-word essays written in the style of Lewis Thomas, a physician who regularly contributed to The New England Journal of Medicine. His 1200-word column, "Notes of a Biology Watcher," ran from 1971 - 1980. The resulting compilations collectively...
Synthesis and discovery lies at the core of every field in chemistry. The investigation of the structure-property relationships in compounds known or new is the fundamental purpose of solid state chemistry. Mixing related solid state compounds to form solid solutions can lead to exciting new and/or unexpected properties. Layered compounds...
Internal variability in twenty-first-century summer Arctic sea ice loss and its relationship to the large-scale atmospheric circulation is investigated in a 39-member Community Climate System Model, version 3 (CCSM3) ensemble for the period 2000–61. Each member is subject to an identical greenhouse gas emissions scenario and differs only in the...