Phytophthora infestans, the causal agent of late blight disease, has been reported in North America since the mid-nineteenth century. In the United States the lack of or very limited sexual reproduction has resulted in largely clonal populations of P. infestans. In 2010 and 2011, but not in 2012 or 2013,...
BACKGROUND: Exocytosis is integral to root growth: trafficking components of systems that control growth (e.g., PIN
auxin transport proteins) to the plasma membrane, and secreting materials that expand the cell wall to the
apoplast. Spatiotemporal regulation of exocytosis in eukaryotes often involves the exocyst, an octameric complex
that tethers selected...
We conduct a hedonic analysis to estimate the response of agricultural land use to water supply information under the Prior Appropriation Doctrine by using Idaho as a case study. Our analysis includes long‐term climate (weather) trends and water supply conditions as well as seasonal water supply forecasts. A farm‐level panel...
Observations show abrupt changes in the oceanic circulation of the southwestern Atlantic. These
studies report a southward drift of the Brazil/Malvinas Confluence (BMC) and a change in the spectral
characteristics of the Malvinas Current (MC) transport. We address the cause of these changes using the result
of a high-resolution numerical...
This paper examines albedo perturbation and radiative forcing after a high-severity fire in a
mature forest in the Oregon Cascade Range. Correlations between postfire albedo and seedling, sapling,
and snag (standing dead tree) density were investigated across fire severity classes and seasons for years
4-15 after fire. Albedo perturbation was...
Combined analyses of deep tow magnetic anomalies and International Ocean Discovery Program Expedition 349 cores show that initial seafloor spreading started around 33 Ma in the northeastern South China Sea (SCS), but varied slightly by 1-2 Myr along the northern continent-ocean boundary (COB). A southward ridge jump of ∼20 km...
Forest understory vegetation is influenced by broad-scale variation in climate, intermediate-scale variation in topography, disturbance and neighborhood interactions. However, little is known about how these multi-scale controls interact to influence observed spatial patterns. We examined relationships between the aggregated cover of understory plant species (%C[subscript U]) and multi-scale controls using...
We report here that (4R,9Z)-hexadec-9-en-4-olide [(R)-desmolactone] is a sex attractant or sex pheromone for multiple species and subspecies in the cerambycid genus Desmocerus. This compound was previously identified as a female-produced sex attractant pheromone of Desmocerus californicus californicus. Headspace volatiles from female Desmocerus aureipennis aureipennis contained (R)-desmolactone, and the antennae...
BACKGROUND: Large quantities of digital images are now generated for biological collections, including those developed in projects premised on the high-throughput screening of genome-phenome experiments. These images often carry annotations on taxonomy and observable features, such as anatomical structures and phenotype variations often recorded in response to the environmental factors...
In a set of streamside mesocosms, stream ecosystem respiration (ER) increased with biofilm biomass and flow heterogeneity (turbulence) generated by impermeable bed forms, even though those bed forms had no hyporheic exchange. Two streamside flumes with gravel beds (single layer of gravel) were operated in parallel. The first flume had...
Peroxiredoxins (Prxs) make up an ancient family of enzymes that are the predominant peroxidases for nearly all organisms and play essential roles in reducing hydrogen peroxide, organic hydroperoxides, and peroxynitrite. Even between distantly related organisms, the core protein fold and key catalytic residues related to its cysteine-based catalytic mechanism have...
Humpback whales (Megaptera novaeangliae), a mysticete with a cosmopolitan distribution, demonstrate
marked behavioural plasticity. Recent studies show evidence of social learning in the transmission of specific
population level traits ranging from complex singing to stereotyped prey capturing behaviour. Humpback
whales have been observed to employ group foraging techniques, however details...
We develop the idea of risk transmission from large wildfires and apply network analyses to understand its importance on a 0.75 million ha US national forest. Wildfires in the western US frequently burn over long distances (e.g., 20-50 km) through highly fragmented landscapes with respect to ownership, fuels,
management intensity,...
Excess fatty acids and sterols are stored as triacylglycerols and sterol esters in
specialized cellular organelles, called lipid droplets. Understanding what determines the cellular
amount of neutral lipids and their packaging into lipid droplets is of fundamental and
applied interest. Using two species of fission yeast, we show that cycling...
The protein palmitoylation cycle has been shown to be important for protein signaling and synaptic plasticity. Data from our lab showed a change in the palmitoylation status of certain proteins with age. A greater percentage of the NMDA receptor subunits GluN2A and GluN2B, along with Fyn and PSD95 proteins, were...
Calcium oxalate (Ca oxalate) is an insoluble biomineral that forms in plants and fungi, and occurs in soils
across many types of ecosystems. Assessing how Ca oxalate may shape ecosystem Ca cycling requires
information on the distribution of Ca oxalate among plant biomass, detritus, and mineral soil, and how
it...
The recent identification of multiple genotypes of the salmonid parasite Ceratonova shasta with different virulence levels in Chinook salmon (Oncorhynchus tshawytscha) suggests that it may be possible to immunize fish against subsequent infection and disease. We hypothesized that exposure of Chinook salmon to the less virulent parasite genotype (II) prior...
The efficacy of DNA extraction protocols can be highly dependent upon both the type of sample being investigated and the types of downstream
analyses performed. Considering that the use of new bacterial community analysis techniques (e.g., microbiomics, metagenomics) is becoming
more prevalent in the agricultural and environmental sciences and many...
The Collection 6 (C6) MODIS (Moderate Resolution
Imaging Spectroradiometer) land and atmosphere data
sets are scheduled for release in 2014. C6 contains significant
revisions of the calibration approach to account for sensor
aging. This analysis documents the presence of systematic
temporal trends in the visible and near-infrared (500 m)
bands...
We have developed VitisCyc, a grapevine-specific metabolic pathway database that allows
researchers to (i) search and browse the database for its various components such as
metabolic pathways, reactions, compounds, genes and proteins, (ii) compare grapevine
metabolic networks with other publicly available plant metabolic networks, and (iii)
upload, visualize and analyze...
Water quality agencies and scientists are increasingly adopting standardized sampling methodologies because of the challenges associated with interpreting data derived from dissimilar protocols. Here, we compare 13 protocols for monitoring streams from different regions and countries around the globe. Despite the spatially diverse range of countries assessed, many aspects of...
The number of wildland–urban interface communities affected by wildfire is increasing, and both wildfire suppression and losses are costly. However, little is known about post-wildfire response by homeowners and communities after buildings are lost. Our goal was to characterise rebuilding and new development after wildfires across the conterminous United States....
The isothiocyanate sulforaphane is a promising molecule for development as a therapeutic agent for patients with metastatic
prostate cancer. Sulforaphane induces apoptosis in advanced prostate cancer cells, slows disease progression in vivo and is well
tolerated at pharmacological doses. However, the underlying mechanism(s) responsible for cancer suppression remain to be...
Advances in forest carbon mapping have the potential
to greatly reduce uncertainties in the global carbon
budget and to facilitate effective emissions mitigation strategies
such as REDDC (Reducing Emissions from Deforestation
and Forest Degradation). Though broad-scale mapping
is based primarily on remote sensing data, the accuracy of
resulting forest carbon...
Gas hydrates, pervasive in continental margin sediments, are expected to release methane in response to ocean warming, but the geographic range of dissociation and subsequent flux of methane to the ocean are not well constrained. Sediment column thermal models based on observed water column warming trends offshore Washington (USA) show...
Whole-genome duplications are radical evolutionary events that have driven speciation and adaptation in many taxa. Higher-order
polyploids have complex histories often including interspecific hybridization and dynamic genomic changes. This chromosomal
reshuffling is poorly understood for most polyploid species, despite their evolutionary and agricultural importance, due to the
challenge of distinguishing...
We report the first systems biology investigation of regulators controlling arterial plaque macrophage transcriptional changes in response to lipid lowering in vivo in two distinct mouse models of atherosclerosis regression. Transcriptome measurements from plaque macrophages from the Reversa mouse were integrated with measurements from an aortic transplant-based mouse model of...
Brown marmorated stink bug, Halyomorpha halys (Stål), (Hemiptera: Pentatomidae) is
an invasive polyphagous agricultural and urban nuisance pest of Asian origin that is
becoming widespread in North America and Europe. Despite the economic importance
of pentatomid pests worldwide, their feeding behavior is poorly understood.
Electronically monitored insect feeding (EMIF) technology...
Abundance, size and development stage data for furcilia and juvenile euphausiids and data on timing and prevalence of attached spermatophores on adult females are used to infer spawning times by four euphausiid species in Frederick Sound and lower Stephens Passage, Southeast Alaska. Results from net tows conducted between late May...
Methane (CH₄) is a valuable fuel, constituting 70–95% of natural gas, and a potent
greenhouse gas. Release of CH₄ into the atmosphere contributes to climate change.
Biological CH₄ production or methanogenesis is mostly performed by methanogens, a
group of strictly anaerobic archaea. The direct substrates for methanogenesis are H₂
plus...
Neurospora crassa has been for decades a principal model for filamentous
fungal genetics and physiology as well as for understanding
the mechanism of circadian clocks. Eukaryotic fungal and animal
clocks comprise transcription-translation-based feedback loops that
control rhythmic transcription of a substantial fraction of these transcriptomes,
yielding the changes in protein...
All parasitoid apostome ciliates infecting krill in the northeastern Pacific are currently assigned to the genus Pseudocollinia. Each krill specimen is apparently infected by only 1 Pseudocollinia species. We describe Pseudocollinia similis sp. nov., discovered infecting the krill Thysanoessa spinifera off Oregon, USA. Its protomite-tomite stage resembles that of P....
OBJECTIVE: To evaluate the effectiveness of a 3-month treadmill desk intervention in eliciting changes in physical activity and sedentary behavior among overweight/obese office workers. METHODS: A randomized controlled trial was conducted among overweight/obese office workers (n=41; mean age = 40.1 ± 10.1 years) at a private workplace. Participants were randomly...
Because studies of forestry effects on wetlands have been so infrequent in the Pacific Northwest, each section in this report drew heavily from studies of forestry impacts to streams and riparian zones. After assembly and synthesis, that information was extrapolated, mostly in the form of hypotheses, to the very different...
Polyandry is a source of sexual conflict and males often try to limit female promiscuity. Consequently, male manipulation of receptivity via antiaphrodisiacs and copulatory plugs that prevent female remating can be a source of sexual conflict. This sexual conflict may be intensified when females must remate for fertility insurance. Male...
This paper distinguishes three concepts of “race”: bio-genomic cluster/race, biological race, and social race. We map out realism, antirealism, and conventionalism about each of these, in three important historical episodes: Frank Livingstone and Theodosius Dobzhansky in 1962, A.W.F. Edwards’ 2003 response to Lewontin (1972), and contemporary discourse. Semantics is especially...
Clark volcano of the Kermadec arc, northeast of New Zealand, is a large stratovolcano comprised of two coalescing volcanic cones; an apparently younger, more coherent, twin-peaked edifice to the northwest and a relatively older, more degraded and tectonized cone to the southeast. High-resolution water column surveys show an active hydrothermal...
Cotoneaster is a genus of ornamental landscape plants commonly affected by fire blight. Fire blight is a disease caused by the bacterial pathogen, Erwinia amylovora (Burrill) Winslow et al. that attacks a wide range of taxa in the apple subfamily (Maloideae; Rosaceae). To assess susceptibility of species and identify potential...
Lepidopteran nucleopolyhedroviruses are members of the Baculoviridae and have been categorized as having two morphotypes of occluded virions: multiple nucleocapsids or single nucleocapsids within the virion envelope. Although it is a definitive characteristic of specific viruses, it appears to lack a defined genetic basis and is independent of virus phylogeny....
The mineralogical and stable isotopic composition of authigenic carbonates from the Krishna-Godavari (KG) and Mahanadi Basin provide a deeper insight into the processes inducing carbonate formation in the sediments of the eastern continental margin of India in the Bay of Bengal. Authigenic carbonate cements, (micro) nodules, bioturbation casts and tubes...
Red alder (Alnus rubra), a nitrogen(N)-fixing deciduous broadleaf tree, can strongly influence N
concentrations in western Oregon and Washington. We compiled a database of stream N and GIS-derived landscape
characteristics in order to examine geographic variation in N across the Oregon Coast Range. Basal area
of alder, expressed as a...
Total organic carbon (TOC) content of marine sediments represents residual carbon, originally derived from terrestrial and marine sources, which has survived seafloor and shallow subseafloor diagenesis. Ultimately, its preservation below the sulfate reduction zone in marine sediments drives methanogenesis. Within the gas hydrate stability zone (GHSZ), methane production along continental...
In the past 100 years since the birth of fisheries oceanography, research on the early life history of fishes, particularly the larval stage, has been extensive, and much progress has been made in identifying the mechanisms by which factors such as feeding success, predation, or dispersal can influence larval survival....
Effects of climate change, retreating glaciers, and changing storm patterns on debris flow hazards concern
managers in the Cascade Range (USA) and mountainous areas worldwide. During an intense rainstorm in
November 2006, seven debris flows initiated from proglacial gullies of separate basins on the flanks of Mount
Rainier. Gully heads...
In addition to well established properties that control the presence or absence of the hydrate stability zone, such as pressure, temperature, and salinity, additional parameters appear to influence the concentration of gas hydrate in host sediments. The stratigraphic record at Site 17A in the Andaman Sea, eastern Indian Ocean, illustrates...
Substantial investments in fuel management activities on national forests in the western US are part of a national strategy to reduce human and ecological losses from catastrophic wildfire and create fire resilient landscapes. Prioritizing these investments within and among national forests remains a challenge, partly because a comprehensive assessment that...
We show that the value of the total angular momentum (AM) carried by a surface mode can be interpreted as representing the transverse position of the center or balance point of the power flow through the mode. Especially in the lossless cases, the value of the Abraham AM per unit...
Primary injury prevention strategies are needed to improve worker safety in the fishing industry by reducing the occurrence of vessel disasters. In 2006, the United States Coast Guard (USCG) implemented a novel safety policy intervention for two fleets of freezer-trawlers and freezer-longliners in Alaska. The Alternate Compliance and Safety Agreement...
Greater sage-grouse (Centrocercus urophasianus; sage-grouse) are highly susceptible to infection with West Nile virus (WNV), with substantial mortality reported in wild populations and in experimentally infected birds. Although sage-grouse are hunted throughout much of their range, they have also recently been considered for protection under the Endangered Species Act. We...
Post-tsunami field surveys in the Minami-Soma exclusion zone in the Fukushima Prefecture were delayed for 15 months after the 2011 Tohoku tsunami. The area was subject to access restrictions until June 2012 due to high radiation levels caused by the meltdown at the Fukushima Dai-ichi Nuclear Power Plant. The distribution...