MOTIVATION: The computational identification of gene transcription start sites (TSSs) can provide insights into the regulation and function of genes without performing expensive experiments, particularly in organisms with incomplete annotations. High-resolution general-purpose TSS prediction remains a challenging problem, with little recent progress on the identification and differentiation of TSSs which...
During the Deepwater Horizon oil well blowout in the Gulf of Mexico, the application of 7 million liters of chemical dispersants aimed to stimulate microbial crude oil degradation by increasing the bioavailability of oil compounds. However, the effects of dispersants on oil biodegradation rates are debated. In laboratory experiments, we...
The Last Interglacial (LIG) represents an invaluable case study to investigate the response of components of the Earth system to global warming. However, the scarcity of absolute age constraints in most archives leads to extensive use of various stratigraphic alignments to different reference chronologies. This feature sets limitations to the...
Five solvents were used to resolubilize the fungal pigments of Chlorociboria aeruginosa and Scytalidium cuboideum, two common fungi used in the spalting of wood pieces. These solvents were tested as a replacement for dichloromethane in the pigment application process, via analysis of their ability to increase internal color coverage inside...
The consumption of animal-sourced food products by humans is one of the most powerful negative forces affecting the conservation of terrestrial ecosystems and biological diversity. Livestock production is the single largest driver of habitat loss, and both livestock and feedstock production are increasing in developing tropical countries where the majority...
Self-regulation skills lay the foundation for short- and long-term school success, and strengthening these skills in early childhood can have significant implications for immediate and future life outcomes (e.g., Blair & Diamond, 2008; McClelland, Acock, Piccinin, Rhea, & Stallings, 2013). A large body of literature has investigated how characteristics of...
The peptidyl nucleoside blasticidin S (BS) isolated from Streptomyces griseochromogenes was the first non-mercurial fungicide used on a large scale to prevent rice blast. In the biosynthesis of BS, leucylblasticidin S (LBS) was suggested as the penultimate metabolite with 20-fold less inhibitory activity than the final product BS. Incomplete conversion...
The relative influences of trans-Pacific and regional atmospheric transport on measured concentrations of polycyclic aromatic hydrocarbons (PAHs), PAH derivatives [Nitro- (NPAH) and Oxy-(OPAH)], organic carbon (OC), and Particulate Matter (PM) less than 2.5 μm in diameter (PM₂.₅) were investigated in the Pacific Northwest, USA in 2010-2011. Ambient high volume PM₂.₅...
This dissertation is informally divided into three major sections. In the first section (Chapter 2) I use data from field mapping, isotopic geochronology, whole rock geochemistry and trace element concentrations in zircons to examine the petrology, geochemistry and ages of the Haquira East porphyry copper deposit of southern Peru. In...