Index Catalog // ScholarsArchive@OSU

Analysis of Genome Sequences from Plant Pathogenic Rhodococcus Reveals Genetic Novelties in Virulence Loci

Creator:: Creason, Allison L., Vandeputte, Olivier M., Savory, Elizabeth A., Davis, Edward W., II, Putnam, Melodie L., Hu, Erdong, Swader-Hines, David, Mol, Adeline, Baucher, Marie, Prinsen, Els, Zdanowska, Magdalena, Givan, Scott A., El Jaziri, Mondher, Loper, Joyce E., Mahmud, Taifo, and Chang, Jeff H.
Abstract:: Members of Gram-positive Actinobacteria cause economically important diseases to plants. Within the Rhodococcus genus, some members can cause growth deformities and persist as pathogens on a wide range of host plants. The current model predicts that phytopathogenic isolates require a cluster of three loci present on a linear plasmid, with...
Resource Type:: Article

Development and Evaluation of a 9K SNP Array for Peach by Internationally Coordinated SNP Detection and Validation in Breeding Germplasm

Creator:: Verde, Ignazio, Bassil, Nahla, Scalabrin, Simone, Gilmore, Barbara, Lawley, Cynthia T., Gasic, Ksenija, Micheletti, Diego, Rosyara, Umesh R., Cattonaro, Federica, Vendramin, Elisa, Main, Dorrie, Aramini, Valeria, Blas, Andrea L., Mockler, Todd C., Bryant, Douglas W., Wilhelm, Larry, Troggio, Michela, Sosinski, Bryon, Jose Aranzana, Maria, Arus, Pere, Iezzoni, Amy, Morgante, Michele, and Peace, Cameron
Abstract:: Correction 21 Jun 2012: Verde I, Bassil N, Scalabrin S, Gilmore B, Lawley CT, et al. (2012) Correction: Development and Evaluation of a 9K SNP Array for Peach by Internationally Coordinated SNP Detection and Validation in Breeding Germplasm. PLOS ONE 7(6): 10.1371/annotation/33f1ba92-c304-4757-91aa-555de64a0768.
Resource Type:: Article

Host-Selective Toxins of Pyrenophora tritici-repentis Induce Common Responses Associated with Host Susceptibility

Creator:: Pandelova, Iovanna, Figueroa, Melania, Wilhelm, Larry J., Manning, Viola A., Mankaney, Aakash N., Mockler, Todd C., and Ciuffetti, Lynda M.
Abstract:: Pyrenophora tritici-repentis (Ptr), a necrotrophic fungus and the causal agent of tan spot of wheat, produces one or a combination of host-selective toxins (HSTs) necessary for disease development. The two most studied toxins produced by Ptr, Ptr ToxA (ToxA) and Ptr ToxB (ToxB), are proteins that cause necrotic or chlorotic...
Resource Type:: Article
Full Text:: . Ciuffetti1* 1 Department of Botany and Plant Pathology and Center for Genome Research and Biocomputing

Mapping the Global Emergence of Batrachochytrium dendrobatidis, the Amphibian Chytrid Fungus

Creator:: Olson, Deanna H., Aanensen, David M., Ronnenberg, Kathryn L., Powell, Christopher I., Walker, Susan F., Bielby, Jon, Garner, Trenton W. J., Weaver, George, The Bd Mapping Group, and Fisher, Matthew C.
Abstract:: The rapid worldwide emergence of the amphibian pathogen Batrachochytrium dendrobatidis (Bd) is having a profound negative impact on biodiversity. However, global research efforts are fragmented and an overarching synthesis of global infection data is lacking. Here, we provide results from a community tool for the compilation of worldwide Bd presence...
Resource Type:: Article
Full Text:: 4 1 2. , The Bd Mapping Group" 1 Pacific Northwest Research Station, U.S. Forest Service

Geo-Referenced, Abundance Calibrated Ocean Distribution of Chinook Salmon (Oncorhynchus tshawytscha) Stocks across the West Coast of North America

Creator:: Bellinger, M. Renee, Banks, Michael A., Bates, Sarah J., Crandall, Eric D., Garza, John Carlos, Sylvia, Gil, and Lawson, Peter W.
Abstract:: Understanding seasonal migration and localized persistence of populations is critical for effective species harvest and conservation management. Pacific salmon (genus Oncorhynchus) forecasting models predict stock composition, abundance, and distribution during annual assessments of proposed fisheries impacts. Most models, however, fail to account for the influence of biophysical factors on year-to-year...
Resource Type:: Article
Full Text:: of Science Version of Record http://cdss.library.oregonstate.edu/sa-termsofuse RESEARCH

Multivariate Models of Adult Pacific Salmon Returns

Creator:: Burke, Brian J., Peterson, William T., Beckman, Brian R., Morgan, Cheryl, Daly, Elizabeth A., and Litz, Marisa
Abstract:: Most modeling and statistical approaches encourage simplicity, yet ecological processes are often complex, as they are influenced by numerous dynamic environmental and biological factors. Pacific salmon abundance has been highly variable over the last few decades and most forecasting models have proven inadequate, primarily because of a lack of understanding...
Resource Type:: Article
Full Text:: Pacific salmon requires multiple types of data and that no single indicator can represent the complex

Ecoregional Analysis of Nearshore Sea-Surface Temperature in the North Pacific

Creator:: Payne, Meredith C., Brown, Cheryl A., Reusser, Deborah A., and Lee, Henry, II
Abstract:: The quantification and description of sea surface temperature (SST) is critically important because it can influence the distribution, migration, and invasion of marine species; furthermore, SSTs are expected to be affected by climate change. To better understand present temperature regimes, we assembled a 29-year nearshore time series of mean monthly...
Resource Type:: Article
Full Text:: 1 Western Fisheries Research Center, United States Geological Survey, Newport, Oregon, United States

Evaluating Multi-Level Models to Test Occupancy State Responses of Plethodontid Salamanders

Creator:: Kroll, Andrew J., Garcia, Tiffany S., Jones, Jay E., Dugger, Katie, Murden, Blake, Johnson, Josh, Peterman, Summer, Brintz, Ben, and Rochelle, Michael
Abstract:: Correction 23 Dec 2015: The PLOS ONE Staff (2015) Correction: Evaluating Multi-Level Models to Test Occupancy State Responses of Plethodontid Salamanders. PLOS ONE 10(12): e0145899. https://doi.org/10.1371/journal.pone.0145899
Resource Type:: Article

Local Variability Mediates Vulnerability of Trout Populations to Land Use and Climate Change

Creator:: Penaluna, Brooke E., Dunham, Jason B., Railsback, Steve F., Arismendi, Ivan, Johnson, Sherri L., Bilby, Robert E., Safeeq, Mohammad, and Skaugset, Arne E.
Abstract:: Land use and climate change occur simultaneously around the globe. Fully understanding their separate and combined effects requires a mechanistic understanding at the local scale where their effects are ultimately realized. Here we applied an individual-based model of fish population dynamics to evaluate the role of local stream variability in...
Resource Type:: Article
Full Text:: Research Station with US Forest Service. The funders had no role in study design, data collection and

ARK: Aggregation of Reads by K-Means for Estimation of Bacterial Community Composition

Creator:: Koslicki, David, Chatterjee, Saikat, Shahrivar, Damon, Walker, Alan W., Francis, Suzanna C., Fraser, Louise J., Vehkaperä, Mikko, Lan, Yueheng, and Corander, Jukka
Abstract:: Motivation: Estimation of bacterial community composition from high-throughput sequenced 16S rRNA gene amplicons is a key task in microbial ecology. Since the sequence data from each sample typically consist of a large number of reads and are adversely impacted by different levels of biological and technical noise, accurate analysis of...
Resource Type:: Article
Full Text:: RESEARCH ARTICLE ARK: Aggregation of Reads by K-Means for Estimation of Bacterial Community Composition

ScholarsArchive@OSU

Analysis of Genome Sequences from Plant Pathogenic Rhodococcus Reveals Genetic Novelties in Virulence Loci

Development and Evaluation of a 9K SNP Array for Peach by Internationally Coordinated SNP Detection and Validation in Breeding Germplasm

Host-Selective Toxins of Pyrenophora tritici-repentis Induce Common Responses Associated with Host Susceptibility

Mapping the Global Emergence of Batrachochytrium dendrobatidis, the Amphibian Chytrid Fungus

Geo-Referenced, Abundance Calibrated Ocean Distribution of Chinook Salmon (Oncorhynchus tshawytscha) Stocks across the West Coast of North America

Multivariate Models of Adult Pacific Salmon Returns

Ecoregional Analysis of Nearshore Sea-Surface Temperature in the North Pacific

Evaluating Multi-Level Models to Test Occupancy State Responses of Plethodontid Salamanders

Local Variability Mediates Vulnerability of Trout Populations to Land Use and Climate Change

ARK: Aggregation of Reads by K-Means for Estimation of Bacterial Community Composition

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