Index Catalog // ScholarsArchive@OSU

Multivariate Models of Adult Pacific Salmon Returns

Creator:: Burke, Brian J., Peterson, William T., Beckman, Brian R., Morgan, Cheryl, Daly, Elizabeth A., and Litz, Marisa
Abstract:: Most modeling and statistical approaches encourage simplicity, yet ecological processes are often complex, as they are influenced by numerous dynamic environmental and biological factors. Pacific salmon abundance has been highly variable over the last few decades and most forecasting models have proven inadequate, primarily because of a lack of understanding...
Resource Type:: Article
Full Text:: Returns Brian J. Burke1*, William T. Peterson2, Brian R. Beckman3, Cheryl Morgan4, Elizabeth A. Daly4

Ocean Acidification Has Multiple Modes of Action on Bivalve Larvae

Creator:: Waldbusser, George G., Hales, Burke, Langdon, Chris J., Haley, Brian A., Schrader, Paul, Brunner, Elizabeth L., Gray, Matthew W., Miller, Cale A., Gimenez, Iria, and Hutchinson, Greg
Abstract:: Ocean acidification (OA) is altering the chemistry of the world’s oceans at rates unparalleled in the past roughly 1 million years. Understanding the impacts of this rapid change in baseline carbonate chemistry on marine organisms needs a precise, mechanistic understanding of physiological responses to carbonate chemistry. Recent experimental work has...
Resource Type:: Article
Full Text:: Larvae Waldbusser, G. G., Hales, B., Langdon, C. J., Haley, B. A., Schrader, P., Brunner, E. L

Evaluating Temporal Consistency in Marine Biodiversity Hotspots

Creator:: Piacenza, Susan E., Thurman, Lindsey L., Barner, Allison K., Benkwitt, Cassandra E., Boersma, Kate S., Cerny-Chipman, Elizabeth B., Ingeman, Kurt E., Kindinger, Tye L., Lindsley, Amy J., Nelson, Jake, Reimer, Jessica N., Rowe, Jennifer C., Shen, Chenchen, Thompson, Kevin A., and Heppell, Selina S.
Abstract:: With the ongoing crisis of biodiversity loss and limited resources for conservation, the concept of biodiversity hotspots has been useful in determining conservation priority areas. However, there has been limited research into how temporal variability in biodiversity may influence conservation area prioritization. To address this information gap, we present an...
Resource Type:: Article
Full Text:: ☯*, Lindsey L. Thurman1☯, Allison K. Barner2‡, Cassandra E. Benkwitt2‡, Kate S. Boersma2,4‡, Elizabeth B

Patterns and Variation in Benthic Biodiversity in a Large Marine Ecosystem

Creator:: Piacenza, Susan E., Barner, Allison K., Benkwitt, Cassandra E., Boersma, Kate S., Cerny-Chipman, Elizabeth B., Ingeman, Kurt E., Kindinger, Tye L., Lee, Jonathan D., Lindsley, Amy J., Reimer, Jessica N., Rowe, Jennifer C., Shen, Chenchen, Thompson, Kevin A., Thurman, Lindsey L., and Heppell, Selina S.
Abstract:: While there is a persistent inverse relationship between latitude and species diversity across many taxa and ecosystems, deviations from this norm offer an opportunity to understand the conditions that contribute to large-scale diversity patterns. Marine systems, in particular, provide such an opportunity, as marine diversity does not always follow a...
Resource Type:: Article
Full Text:: Susan E. Piacenza1☯*, Allison K. Barner2☯, Cassandra E. Benkwitt2☯, Kate S. Boersma2☯¤, Elizabeth B

Regional Contingencies in the Relationship between Aboveground Biomass and Litter in the World’s Grasslands

Creator:: O’Halloran, Lydia R., Chu, Chengjin, Bakker, Jonathan D., Davies, Kendi F., Du, Guozhen, Firn, Jennifer, Hagenah, Nicole, Hofmockel, Kirsten S., Knops, Johannes M. H., Li, Wei, Melbourne, Brett A., Borer, Elizabeth T., Morgan, John W., Orrock, John L., Prober, Suzanne M., Stevens, Carly J., Seabloom, Eric W., MacDougall, Andrew S., Cleland, Elsa E., McCulley, Rebecca L., Hobbie, Sarah, Harpole, W. Stan, and DeCrappeo, Nicole M.
Abstract:: Based on regional-scale studies, aboveground production and litter decomposition are thought to positively covary, because they are driven by shared biotic and climatic factors. Until now we have been unable to test whether production and decomposition are generally coupled across climatically dissimilar regions, because we lacked replicated data collected within...
Resource Type:: Article
Full Text:: . CRC Press, Boca Raton, Florida, USA. 45. Fang J, Piao S, Tang Z, Peng C, Ji W (2001) Interannual

Low Susceptibility of Invasive Red Lionfish (Pterois volitans) to a Generalist Ectoparasite in Both Its Introduced and Native Ranges

Creator:: Sikkel, Paul C., Tuttle, Lillian J., Cure, Katherine, Coile, Ann Marie, and Hixon, Mark A.
Abstract:: Escape from parasites in their native range is one of many mechanisms that can contribute to the success of an invasive species. Gnathiid isopods are blood-feeding ectoparasites that infest a wide range of fish hosts, mostly in coral reef habitats. They are ecologically similar to terrestrial ticks, with the ability...
Resource Type:: Article
Full Text:: Ranges Paul C. Sikkel1*, Lillian J. Tuttle2, Katherine Cure3,4, Ann Marie Coile1, Mark A. Hixon5 1

The Level of Residual Dispersion Variation and the Power of Differential Expression Tests for RNA-Seq Data

Creator:: Mi, Gu and Di, Yanming
Abstract:: RNA-Sequencing (RNA-Seq) has been widely adopted for quantifying gene expression changes in comparative transcriptome analysis. For detecting differentially expressed genes, a variety of statistical methods based on the negative binomial (NB) distribution have been proposed. These methods differ in the ways they handle the NB nuisance parameters (i.e., the dispersion...
Resource Type:: Article
Full Text:: ): log ð�ijÞ ¼ f ðaij; aÞ; ð1Þ where i indexes genes and j indexes biological samples. For example, in

Length Bias Correction in Gene Ontology Enrichment Analysis Using Logistic Regression

Creator:: Mi, Gu, Di, Yanming, Emerson, Sarah, Cumbie, Jason S., and Chang, Jeff H.
Abstract:: When assessing differential gene expression from RNA sequencing data, commonly used statistical tests tend to have greater power to detect differential expression of genes encoding longer transcripts. This phenomenon, called "length bias", will influence subsequent analyses such as Gene Ontology enrichment analysis. In the presence of length bias, Gene Ontology...
Resource Type:: Article
Full Text:: and gave final approval of the article: GM YD SE JSC JHC. References 1. Robinson M, McCarthy D

Fin whale movements in the Gulf of California, Mexico, from satellite telemetry

Creator:: Jimenez Lopez, M. Esther, Palacios, Daniel M., Jaramillo Legorreta, Armando, Urban R, Jorge, and Mate, Bruce R.
Abstract:: Fin whales (Balaenoptera physalus) have a global distribution, but the population inhabiting the Gulf of California (GoC) is thought to be geographically and genetically isolated. However, their distribution and movements are poorly known. The goal of this study was to describe fin whale movements for the first time from 11...
Resource Type:: Article
Full Text:: Ser. 2007; 337: 255–2007. 27. Breed GA, Costa DP, Jonsen ID, Robinson PW, Mills-Flemming J. State

Simulated Evolution of Protein-Protein Interaction Networks with Realistic Topology

Creator:: Peterson, G. Jack, Pressé, Steve, Peterson, Kristin S., and Dill, Ken A.
Abstract:: We model the evolution of eukaryotic protein-protein interaction (PPI) networks. In our model, PPI networks evolve by two known biological mechanisms: (1) Gene duplication, which is followed by rapid diversification of duplicate interactions. (2) Neofunctionalization, in which a mutation leads to a new interaction with some other protein. Since many...
Resource Type:: Article
Full Text:: with our model’s prediction. The distance between nodes i and j is defined as the number of node-to

ScholarsArchive@OSU

Multivariate Models of Adult Pacific Salmon Returns

Ocean Acidification Has Multiple Modes of Action on Bivalve Larvae

Evaluating Temporal Consistency in Marine Biodiversity Hotspots

Patterns and Variation in Benthic Biodiversity in a Large Marine Ecosystem

Regional Contingencies in the Relationship between Aboveground Biomass and Litter in the World’s Grasslands

Low Susceptibility of Invasive Red Lionfish (Pterois volitans) to a Generalist Ectoparasite in Both Its Introduced and Native Ranges

The Level of Residual Dispersion Variation and the Power of Differential Expression Tests for RNA-Seq Data

Length Bias Correction in Gene Ontology Enrichment Analysis Using Logistic Regression

Fin whale movements in the Gulf of California, Mexico, from satellite telemetry

Simulated Evolution of Protein-Protein Interaction Networks with Realistic Topology

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