Environmental history recorded in estuarine sediment describes water quality regimes through the use of geochemical and biological proxies. We collected sediment cores from two locations in the Coos Estuary, Oregon, at South Slough and Haynes Inlet, spanning from ~ 1680 AD to the present. To reconstruct the historical water column oxygen...
This case study explores how to add value to regional ocean condition forecast information by bringing awareness to the processes that govern decision-making and outcomes within the system. A modified mental models research approach is applied to examine differences and similarities in perceptions of risk and comfort with uncertainty between...
Community structure and function in ecosystems are dependent on top‐down and bottom‐up factors, which vary across local, regional, and temporal scales. In estuaries of the U.S. Pacific Northwest coast, eelgrass (Zostera marina) ecosystems are exposed to latitudinally varying oceanographic inputs in the form of ocean upwelling. Previous research suggests that...
This case study is in response to a recognized need to transform short-term regional ocean condition forecast information into useful data products for a range of end users, considering their perceptions of uncertainty and risk associated with these forecasts. It demonstrates the value of user engagement in achieving long-term goals...
Harbor porpoises (Phocoena phocoena) are commonly observed in Oregon's nearshore marine environment yet knowledge of their ecosystem use and behavior remains limited, generating concerns for potential impacts on this species from future coastal development. Passive acoustic monitoring was used to investigate spatial and temporal variations in the presence and foraging...
Small unmanned aircraft systems (sUASs) are fostering novel approaches to marine mammal research, including baleen whale photogrammetry, by providing new observational perspectives. We collected vertical images of 89 gray and 6 blue whales using low cost sUASs to examine the accuracy of image based morphometry. Moreover, measurements from 192 images...
The impact of a tsunami can vary greatly across short distances due to differences in topography, building structures, concentration of economic activities in the inundation zone, and economic linkages beyond the inundation zone. This study takes these factors into account in an analysis of a potential tsunami on the West...
Many pharmaceuticals have negative effects on biota when released into the environment. For example, recent work has shown that the commonly prescribed antidiabetic drug, metformin (N,N-dimethylbiguanide), has endocrine disrupting effects on fish. However, effects of metformin on aquatic primary producers are poorly known. We exposed cultured isolates of a freshwater...
The maintenance of pH homeostasis is critical for a variety of cellular metabolic processes. Although ocean acidification is likely to influence cellular metabolism and energy balance, the degree to which intracellular pH in phytoplankton differs from the external environment under varying environmental pH levels is not well characterized. While there...
Engineered log jams (ELJs) are commonly implemented in rivers to stabilize streambanks and diversify fish habitat, but few studies have verified the hydraulic benefits of ELJs by assessing their effects on the flow field. This field and modeling study assessed the effects of an ELJ on various characteristics of the...
Coupled models of coastal hazards, ecosystems, socioeconomics, and landscape management in conjunction with alternative scenario analysis provide tools that can allow decision-makers to explore effects of policy decisions under uncertain futures. Here, we describe the development and assessment of a set of model-based alternative future scenarios examining climate and population...
Organisms use a variety of environmental cues to orient their movements in three-dimensional space. Here, we show that the upward movement of young Chinook salmon (Oncorhynchus tshawytscha) emerging from gravel nests is influenced by the geomagnetic field. Fish in the ambient geomagnetic field travelled farther upwards through substrate than did...
Aggregations of the neustonic hydrozoan Velella velella occur periodically in the northern California Current. Despite the regular occurrence of notable bloom events in this productive upwelling zone, little is known about their trophic ecology. We used gut content and stable isotope analyses (SIA) to elucidate V. velella prey selectivity and...
Long-distance migrants, including Pacific salmon (Oncorhynchus
spp), can use geomagnetic information to navigate. We tested
the hypothesis that a “magnetic map” (i.e., an ability to extract
positional information from Earth’s magnetic field) also exists in a
population of salmon that do not undertake oceanic migrations.
This study examined juvenile Atlantic...
"Explaining Reinforcement Learning to Mere Mortals: An Empirical Study
This is the dataset for replicating our study, which was accepted to IJCAI '19.
We present a user study to investigate the impact of explanations on non-experts’ understanding of reinforcement learning (RL) agents. We investigate both a common RL visualization, saliency...
Conflicts can arise when the recovery of one protected species limits the recovery of another through competition or predation. The recovery of many marine mammal populations on the west coast of the United States has been viewed as a success; however, within Puget Sound in Washington State, the increased abundance...
Many marine mammal predators, particularly pinnipeds, have increased in abundance in recent decades, generating new challenges for balancing human uses with recovery goals via ecosystem-based management. We used a spatio-temporal bioenergetics model of the Northeast Pacific Ocean to quantify how predation by three species of pinnipeds and killer whales (Orcinus...
With more than 407 species of freshwater and brackish water fishes, Gabon is a country rich in ichthyological biodiversity, but its aquatic environments remain poorly explored. We present and describe a new species of Enteromius, adding to the 16 species of Enteromius currently recorded from that country. This new species...
Bedrock (U-Th)/He data reveal an Eocene exhumation difference greater than four kilometers athwart Owens Valley, California near the Alabama Hills. This difference is localized at the eastern fault-bound edge of the valley between the Owens Valley Fault and the Inyo-White Mountains Fault. Time-temperature modeling of published data reveal a major...
Dendrochronological data provides insight in the tree development, and used in conjunction with forest inventory, can supply inputs for growth and yield modeling. However, accurate and precise measurements of a large number of incremental cores require significant resources. One possible source of valuable tree ring data are national forest inventories...
Terrestrial chronologies from southern Greenland provide a detailed deglacial history of the Greenland Ice Sheet (GIS). The northern GIS margin history, however, is less established. Here we present surface exposure ages from moraines associated with two large outlet glaciers, Petermann and Humboldt, in the northwestern sector of the GIS. These...
Aim C-4 grasses are distinct from C-3 grasses, because C-4 grasses respond in a different manner to light, temperature, CO2 and nitrogen and often have higher resource-use efficiencies. C-3 and C-4 grasses are typically represented in earth system models (ESMs) by different plant functional types (PFTs). The ability of ESMs...
We propose a time dependent Eulerian model for sea surface entrainment, buoyancy transport and droplet dynamics of ocean oil. The model captures the microscale vertical oil mass exchanges in the neighborhood of the sea surface. This model is in turn part of an oil fate model designed to capture oil...
Objectives
A growing body of research has found that healthcare discrimination is a significant barrier in accessing healthcare among Latino patients. Despite evidence of the effects of perceived discrimination among Latinos, psychometric testing of scales used in previous research is limited. The present study explored the psychometric properties of a...
Whether CaCO₃ dissolves within the top centimeters of marine sediments overlaid by deep, supersaturated bottom waters remains an area of debate in geochemistry. This uncertainty stems from the fact that different methods used to assess CaCO₃ dissolution rates often provide what appear to be profoundly different results. Here we combine...
In recent years the conservation community has engaged in debate over value in nonhuman nature, especially as it relates to motivations for conservation. Many have expressed the assumption that more people are willing to support conservation when emphasis is placed on the human benefits of nonhuman nature, rather than the...
Movement in an important component of an animal’s life cycle when it relies on both aquatic and terrestrial habitats. When multiple species overlap in the use of these habitats, they rely on other methods to reduce competition for shared resources. This dataset measured the jumping performance and movement behavior of...
The accessions used in this study were comprised of 246 snap bean and 49 dry bean genotypes. Of these, 150 snap bean accessions came from the Common Bean Coordinated Agriculture Project Snap Bean Diversity panel, an assemblage of 59 Chinese snap bean genotypes obtained from a trip to China in...
Recognisable debris from the Great Tōhoku Earthquake and Tsunami of March 2011 began arriving on the coasts of Oregon and Washington, USA in June 2012. This debris often carried fouling Japanese marine algae, and there was concern that these species might recruit and invade northeast Pacific shores. From June 2012...
The influence of the flood pulse on fish populations has been posited, but infrequently tested or quantified. Here, we tested the effect of habitat on population size, using Prochilodus nigricans as a case study species. Floodplain habitat was based on the littoral zone area occupied by P. nigricans to feed....
Biomass gasification is a promising way to obtain green energy, but the gas composition makes it unsuitable for use in traditional technologies (i.e., IC engine). Gas purification over nickel and/or iron catalysts is an attractive alternative. Cellulose-based carbon aerogels (CAGs) have shown suitable physical chemical properties for use as catalyst...
Carnivore predation on livestock often leads people to retaliate. Persecution by humans has contributed strongly to global endangerment of carnivores. Preventing livestock losses would help to achieve three goals common to many human societies: preserve nature, protect animal welfare, and safeguard human livelihoods. Between 2016 and 2018, four independent reviews...
The objectives of this study were to evaluate the performance of wood-frame shear walls under monotonic and cyclic loads by: 1) determining variability of shear wall performance; 2) comparing performance of walls under each loading protocol; 3) evaluating effects of anchorage on wall perfor-mance; and 4) evaluating performance of walls...
Micronutrient deficiency, also known as the hidden hunger, affects over two billion people worldwide. Potato is the third most consumed food crops in the world, and is therefore a fundamental element of food security for millions of people. Increasing the amount of micronutrients in food crop could help alleviate worldwide...
During traditional boat-based surveys of marine megafauna, behavioral observations are typically limited to records of animal surfacings obtained from a horizontal perspective. Achieving an aerial perspective has been restricted to brief helicopter or airplane based observations that are costly, noisy, and risky. The emergence of commercial small unmanned aerial systems...
Commercial fishing is deeply embedded in the economy and culture of many communities on the Oregon coast. Recent economic, environmental, and regulatory changes impacting fisheries have exacerbated the need to investigate the relationship between the commercial fishing industry and their host communities. The objective of this study is to examine...
This study investigates the use of a mobile application, Whale mAPP, as a citizen science tool for collecting marine mammal sighting data. In just over three months, 1261 marine mammal sightings were observed and recorded by 39 citizen scientists in Southeast Alaska. The resulting data, along with a preliminary and...
Ecotourism is a movement that seeks to sustain local communities by uniting conservation, travel, and education. To minimize effects on animal behavior, ecotourism operations must be carefully managed. Local management efforts that can be tailored to the specific area and animals may be more successful than broad‐scale efforts that may...
Pyrosomes are colonial pelagic tunicates that have fascinated marine biologists for over a century. Their name comes from the “fiery” bioluminescence that luminous organs produce at night time. Blooms of pyrosomes, identified as Pyrosoma atlanticum (Peron, 1804), have recently appeared in the North Pacific Ocean, prompting questions about environmental factors...
Understanding larval bivalve responses to variable regimes of seawater carbonate chemistry requires realistic quantification of physiological stress. Based on a degree-day modeling approach, we developed a new metric, the ocean acidification stress index for shellfish (OASIS), for this purpose. OASIS integrates over the entire larval period the instantaneous stress associated...
Marine macrophyte wrack (macroalgae and seagrasses) frequently washes onto beaches but little is known about the factors controlling its biogeographic variability. We report on a large-scale study of macrophyte wrack deposition patterns on the US Pacific Northwest coast. We measured macrophyte wrack on 12 sandy beach sites from southern Washington...
The dataset here is used as a document file for presenting supplementary videos in the dissertation Tao, K. (2018). Investigating protein-lipid-membrane interactions in Plant Cells using Bimolecular Fluorescence Complementation (Doctoral dissertation).
Keywords: Protein, Lipid, Membrane, Plant Cells, Fluorescent Imaging
Many marine mammal predators, particularly pinnipeds, have increased in abundance in recent decades, generating new challenges for balancing human uses with recovery goals via ecosystem-based management. We used a spatio-temporal bioenergetics model of the Northeast Pacific Ocean to quantify how predation by three species of pinnipeds and killer whales (Orcinus...
Consultation is increasingly viewed as a critical factor in renewable energy development, including ocean energy (OE) development. Failure to consult the community and other stakeholders and failure to employ the appropriate methods for consultation will, in many instances, impact the successful development and implementation of the OE project. This chapter...
As an emerging industry, ocean energy (OE) is expected to play a major contributory role to reach long-term global emissions reductions targets. The offshore environment has become the new frontier for renewable energy production with many high-capacity wind parks and other technologies such as tidal and wave energy being increasingly...
Coastal wetland plants are adapted to varying degrees of inundation. However, functional relationships between inundation and productivity are poorly characterized for most species. Determining species-specific tolerances to inundation is necessary to evaluate sea-level rise (SLR) effects on future marsh plant community composition, quantify organic matter inputs to marsh accretion, and...
The influence of pH on phytoplankton physiology is an important facet of the body of research on ocean acidification. We provide data developed during the design and implementation of a novel pHstat system capable of maintaining both static and dynamic pH environments in a laboratory setting. These data both help...
Laboratory investigations of physiological processes in phytoplankton require precise control of experimental conditions. Chemostats customized to control and maintain stable pH levels (pHstats) are ideally suited for investigations of the effects of pH on phytoplankton physiology, for example in context of ocean acidification. Here we designed and constructed a simple,...
The near-term progression of ocean acidification (OA) is projected to bring about sharp changes in the chemistry of coastal upwelling ecosystems. The distribution of OA exposure across these early-impact systems, however, is highly uncertain and limits our understanding of whether and how spatial management actions can be deployed to ameliorate...
Koi herpesvirus (KHV) is highly pathogenic to Cyprinus carpio. KHV can also become latent in recovered fish and reactivate from latency under stressful conditions. Understanding KHV latency is important for development of strategies against herpesvirus latent infection. Our previous studies found KHV ORF6 mRNA is detectable during latent infection. In...