Index Catalog // ScholarsArchive@OSU

High-Throughput Sequencing of Arabidopsis microRNAs : Evidence for Frequent Birth and Death of MIRNA Genes

Creator:: Fahlgren, Noah, Howell, Miya D., Kasschau, Kristin D., Sullivan, Christopher M., Cumbie, Jason S., Givan, Scott A., Law, Theresa F., Grant, Sarah R., Dangl, Jeffrey L., and Carrington, James C.
Abstract:: In plants, microRNAs (miRNAs) comprise one of two classes of small RNAs that function primarily as negative regulators at the posttranscriptional level. Several MIRNA genes in the plant kingdom are ancient, with conservation extending between angiosperms and the mosses, whereas many others are more recently evolved. Here, we use deep...
Resource Type:: Article
Full Text:: . Law3, Sarah R. Grant3, Jeffery L. Dangl3, James C. Carrington1* 1 Center for Genome Research and

Uncertainty analysis: an evaluation metric for synthesis science

Creator:: Harmon, Mark E., Fasth, Becky, Halpern, Charles B., and Lutz, James A.
Abstract:: The methods for conducting reductionist ecological science are well known and widely used. In contrast, those used in the synthesis of ecological science (i.e., synthesis science) are still being developed, vary widely, and often lack the rigor of reductionist approaches. This is unfortunate because the synthesis of ecological parts into...
Resource Type:: Article
Full Text:: ,1 CHARLES B. HALPERN,2 AND JAMES A. LUTZ3 1Department of Forest Ecosystems and Society, Oregon

High-Density SNP Genotyping of Tomato (Solanum lycopersicum L.) Reveals Patterns of Genetic Variation Due to Breeding

Creator:: Sim, Sung-Chur, Van Deynze, Allen, Stoffel, Kevin, Douches, David S., Zarka, Daniel, Ganal, Martin W., Chetelat, Roger T., Hutton, Samuel F., Scott, John W., Gardner, Randolph G., Panthee, Dilip R., Mutschler, Martha, Myers, James R., and Francis, David M.
Abstract:: The effects of selection on genome variation were investigated and visualized in tomato using a high-density single nucleotide polymorphism (SNP) array. 7,720 SNPs were genotyped on a collection of 426 tomato accessions (410 inbreds and 16 hybrids) and over 97% of the markers were polymorphic in the entire collection. Principal...
Resource Type:: Article
Full Text:: . Hutton6, John W. Scott6, Randolph G. Gardner7, Dilip R. Panthee7, Martha Mutschler8, James R. Myers9

AI, Robot: A Rhetorical Analysis of Jeopardy! Matches Featuring IBM’s Artificial Intelligence

Creator:: Steele, Evan T.
Abstract:: The relationship between the public and new technologies has historically been a tumultuous one, with public perceptions ranging from excited rapid adoption to standoffish pessimism. In 2011, IBM tried to use competition as a means of showcasing a new technology to the public. This thesis is a work of rhetorical...
Resource Type:: Masters Thesis
Full Text:: . 1, 1968, p. 1. 4 Rahwan, Iyad, and Guillermo R. Simari. Argumentation in Artificial Intelligence

Intra‐ and inter‐annual variation in gray whale body condition on a foraging ground

Creator:: Soledade Lemos, Leila, Burnett, Jonathan D., Chandler, Todd E., Sumich, James L., and Torres, Leigh G.
Abstract:: Baleen whales store energy gained on foraging grounds to support reproduction and other metabolic needs while fasting for long periods during migration. Whale body condition can be used to monitor foraging success, and thus better understand and anticipate individual‐ and population‐level trends in reproduction and survival. We assessed the body...
Resource Type:: Article
Full Text:: foraging ground LEILA SOLEDADE LEMOS ,1,� JONATHAN D. BURNETT ,2 TODD E. CHANDLER,1 JAMES L. SUMICH ,3

Eocene and not Cretaceous origin of spider wasps: Fossil evidence from amber

Creator:: Rodriguez, Juanita, Waichert, Cecilia, von Dohlen, Carol D., Poinar, George, Jr., and Pitts, James P.
Abstract:: Spider wasps had long been proposed to originate in the mid-Cretaceous based on the Burmese amber fossil Bryopompilus interfector Engel and Grimaldi, 2006. We performed a morphological examination of this fossil and determined it does not belong to Pompilidae or any other described hymenopteran family. Instead, we place it in...
Resource Type:: Article
Full Text:: Poinar Jr, and James P. Pitts Acta Palaeontologica Polonica 61 (1), 2016: 89-96 doi:http://dx.doi.org

Farm Zoning and Fairness in Oregon 1964 - 2014

Creator:: Richmond, Henry R. and Houchen, Timothy G.
Abstract:: Senate Bill 100 (1973) and the Oregon Land Conservation and Development Commission’s (LCDC) goals (1975) required: - Cities to adopt urban growth boundaries (UGBs) to contain sprawl, and - Counties to use zoning to limit 15.6 million acres of farmland to farm use, and 8.0 million acres of forest land...
Resource Type:: Technical Report
Full Text:: Institute Portland, Oregon by Henry R. Richmond Timothy G. Houchen February 19, 2015 Dedication

Recruitment, Growth and Mortality of an Antarctic Hexactinellid Sponge, Anoxycalyx joubini

Creator:: Dayton, Paul K., Kim, Stacy, Jarrell, Shannon C., Oliver, John S., Hammerstrom, Kamille, Fisher, Jennifer L., O'Connor, Kevin, Barber, Julie S., Robilliard, Gordon, Barry, James, Thurber, Andrew R., and Conlan, Kathy
Abstract:: Polar ecosystems are sensitive to climate forcing, and we often lack baselines to evaluate changes. Here we report a nearly 50-year study in which a sudden shift in the population dynamics of an ecologically important, structure-forming hexactinellid sponge, Anoxycalyx joubini was observed. This is the largest Antarctic sponge, with individuals...
Resource Type:: Article
Full Text:: , James Barry6, Andrew R. Thurber7, Kathy Conlan8 1 Scripps Institution of Oceanography, La Jolla

Historical Biogeography and Diversification of Truffles in the Tuberaceae and Their Newly Identified Southern Hemisphere Sister Lineage

Creator:: Bonito, Gregory, Smith, Matthew E., Nowak, Michael, Healy, Rosanne A., Guevara, Gonzalo, Cazares, Efren, Kinoshita, Akihiko, Nouhra, Eduardo R., Domınguez, Laura S., Tedersoo, Leho, Murat, Claude, Wang, Yun, Arroyo Moreno, Baldomero, Pfister, Donald H., Nara, Kazuhide, Zambonelli, Alessandra, Trappe, James M., and Vilgalys, Rytas
Abstract:: Truffles have evolved from epigeous (aboveground) ancestors in nearly every major lineage of fleshy fungi. Because accelerated rates of morphological evolution accompany the transition to the truffle form, closely related epigeous ancestors remain unknown for most truffle lineages. This is the case for the quintessential truffle genus Tuber, which includes...
Resource Type:: Article
Full Text:: , Akihiko Kinoshita11, Eduardo R. Nouhra5, Laura S. Domı́nguez5, Leho Tedersoo6, Claude Murat7, Yun Wang8

Genome-Wide Profiling and Analysis of Arabidopsis siRNAs

Creator:: Kasschau, Kristin D., Fahlgren, Noah, Chapman, Elisabeth J., Sullivan, Christopher M., Cumbie, Jason S., Givan, Scott A., and Carrington, James C.
Abstract:: Eukaryotes contain a diversified set of small RNA-guided pathways that control genes, repeated sequences, and viruses at the transcriptional and posttranscriptional levels. Genome-wide profiles and analyses of small RNAs, particularly the large class of 24-nucleotide (nt) short interfering RNAs (siRNAs), were done for wild-type Arabidopsis thaliana and silencing pathway mutants...
Resource Type:: Article
Full Text:: . Sullivan 1,2 , Jason S. Cumbie 1,2 , Scott A. Givan 1,2 , James C. Carrington 1,2* 1 Center for Genome

ScholarsArchive@OSU

High-Throughput Sequencing of Arabidopsis microRNAs : Evidence for Frequent Birth and Death of MIRNA Genes

Uncertainty analysis: an evaluation metric for synthesis science

High-Density SNP Genotyping of Tomato (Solanum lycopersicum L.) Reveals Patterns of Genetic Variation Due to Breeding

AI, Robot: A Rhetorical Analysis of Jeopardy! Matches Featuring IBM’s Artificial Intelligence

Intra‐ and inter‐annual variation in gray whale body condition on a foraging ground

Eocene and not Cretaceous origin of spider wasps: Fossil evidence from amber

Farm Zoning and Fairness in Oregon 1964 - 2014

Recruitment, Growth and Mortality of an Antarctic Hexactinellid Sponge, Anoxycalyx joubini

Historical Biogeography and Diversification of Truffles in the Tuberaceae and Their Newly Identified Southern Hemisphere Sister Lineage

Genome-Wide Profiling and Analysis of Arabidopsis siRNAs

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