Index Catalog // ScholarsArchive@OSU

Simulated Evolution of Protein-Protein Interaction Networks with Realistic Topology

Creator:: Peterson, G. Jack, Pressé, Steve, Peterson, Kristin S., and Dill, Ken A.
Abstract:: We model the evolution of eukaryotic protein-protein interaction (PPI) networks. In our model, PPI networks evolve by two known biological mechanisms: (1) Gene duplication, which is followed by rapid diversification of duplicate interactions. (2) Neofunctionalization, in which a mutation leads to a new interaction with some other protein. Since many...
Resource Type:: Article
Full Text:: 2012 | Volume 7 | Issue 6 | e39052 Q: 1 K XN i,j Aij{ kikj K � � d(ui,uj), ð1Þ where ki and kj

Comparison of fixatives and fixation time for PCR detection of Mycobacterium in zebrafish Danio rerio

Creator:: Peterson, Tracy S., Kent, Michael L., Ferguson, Jayde A., Watral, Virginia G., and Whipps, Christopher M.
Abstract:: Mycobacteriosis is a common disease of laboratory zebrafish Danio rerio. Different infection patterns occur in zebrafish depending on mycobacterial species. Mycobacterium marinum and M. haemophilum produce virulent infections associated with high mortality, whereas M. chelonae is more widespread and is not associated with high mortality. Identification of mycobacterial infections to...
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Full Text:: , Sanders JL, LaDu J, Peterson TS, Tanguay RL (2011) Development and main- tenance of a specific pathogen

What the Inbred Scandinavian Wolf Population Tells Us about the Nature of Conservation

Creator:: Räikkönen, Jannikke, Vucetich, John A., Vucetich, Leah M., Peterson, Rolf O., and Nelson, Michael P.
Abstract:: The genetic aspects of population health are critical, but frequently difficult to assess. Of concern has been the genetic constitution of Scandinavian wolves (Canis lupus), which represent an important case in conservation. We examined the incidence of different congenital anomalies for 171 Scandinavian wolves, including the immigrant founder female, born...
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Full Text:: aspects of population health. Citation: Räikkönen J, Vucetich JA, Vucetich LM, Peterson RO, Nelson MP

CoastColour Round Robin data sets: a database to evaluate the performance of algorithms for the retrieval of water quality parameters in coastal waters

Creator:: Nechad, B., Ruddick, K., Schroeder, T., Oubelkheir, K., Blondeau-Patissier, D., Cherukuru, N., Brando, V., Dekker, A., Clementson, L., Banks, A. C., Maritorena, S., Werdell, P. J., Sá, C., Brotas, V., Caballero de Frutos, I., Ahn, Y., Salama, S., Tilstone, G., Martinez-Vicente, V., Foley, D., McKibben, M., Nahorniak, J., Peterson, T., Siliò-Calzada, A., Röttgers, R., Lee, Z., Peters, M., and Brockmann, C.
Abstract:: The use of in situ measurements is essential in the validation and evaluation of the algorithms that provide coastal water quality data products from ocean colour satellite remote sensing. Over the past decade, various types of ocean colour algorithms have been developed to deal with the optical complexity of coastal...
Resource Type:: Article

Comparing statistical techniques to classify the structure of mountain forest stands using CHM-derived metrics in Trento province (Italy)

Creator:: Torresan, Chiara L., Strunk, Jacob, Zald, Harold S. J., Zhiqiang, Yang, and Cohen, Warren B.
Abstract:: In some cases a canopy height model (CHM) is the only available source of forest height information. For these cases it is important to understand the predictive power of CHM data for forest attributes. In this study we examined the use of lidar-derived CHM metrics to predict forest structure classes...
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Full Text:: Trento province (Italy) Torresan, C. L., Strunk, J., Zald, H. S. J., Zhiqiang, Y., & Cohen, W. B. (2014

Long-distance migration of prey synchronizes demographic rates of top predators across broad spatial scales

Creator:: Ward, E. J., Dahlheim, M. E., Waite, J. M., Emmons, C. K., Marshall, K. N., Chasco, B. E., and Balcomb, K. C. III
Abstract:: Reproductively and geographically isolated populations of predators may be synchronized by a phenomenon known as the Moran effect—specifically if they exhibit common responses to external processes, such as climate, density dependence (parasites, disease), or prey. Prey has the ability to synchronize predators if geographically isolated predator populations target the same...
Resource Type:: Article

A bioenergetics model to evaluate demographic consequences of disturbance in marine mammals applied to gray whales

Creator:: Villegas-Amtmann, S., Schwarz, L. K., Sumich, J. L., and Costa, D. P.
Abstract:: While sophisticated tools are used to monitor behavioral changes of large marine vertebrates, determining whether these changes are meaningful for management and conservation is challenging. The Population Consequences of Disturbance model proposed a bioenergetics model to detect biologically meaningful population responses, where disturbance costs are linked to lost energy. The...
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Full Text:: marine mammals applied to gray whales S. VILLEGAS-AMTMANN,1,� L. K. SCHWARZ,1 J. L. SUMICH,2 AND D. P

Effects of Cu/Zn Superoxide Dismutase (sod1) Genotype and Genetic Background on Growth, Reproduction and Defense in Biomphalaria glabrata

Creator:: Bonner, Kaitlin M., Bayne, Christopher J., Larson, Maureen K., and Blouin, Michael S.
Abstract:: Resistance of the snail Biomphalaria glabrata to the trematode Schistosoma mansoni is correlated with allelic variation at copper-zinc superoxide dismutase (sod1). We tested whether there is a fitness cost associated with carrying the most resistant allele in three outbred laboratory populations of snails. These three populations were derived from the...
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Full Text:: . Bonner*, Christopher J. Bayne, Maureen K. Larson, Michael S. Blouin Department of Zoology, Oregon State

Viewing forests through the lens of complex systems science

Creator:: Filotas, Elise, Parrott, Lael, Burton, Philip J., Chazdon, Robin L., Coates, K. David, Coll, Lluis, Haeussler, Sybille, Martin, Kathy, Nocentini, Susanna, Puettmann, Klaus J., Putz, Francis E., Simard, Suzanne W., and Messier, Christian
Abstract:: Complex systems science provides a transdisciplinary framework to study systems characterized by (1) heterogeneity, (2) hierarchy, (3) self‐organization, (4) openness, (5) adaptation, (6) memory, (7) non‐linearity, and (8) uncertainty. Complex systems thinking has inspired both theory and applied strategies for improving ecosystem resilience and adaptability, but applications in forest ecology...
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Full Text:: ,� LAEL PARROTT,2 PHILIP J. BURTON,3 ROBIN L. CHAZDON,4 K. DAVID COATES,5 LLUÍS COLL,6,7 SYBILLE

The WAIS Divide deep ice core WD2014 chronology – Part 1: Methane synchronization (68–31 kaBP) and the gas age–ice age difference

Creator:: Buizert, C., Cuffey, K. M., Severinghaus, J. P., Baggenstos, D., Fudge, T. J., Steig, E. J., Markle, B. R., Winstrup, M., Rhodes, R. H., Brook, Edward J., Sowers, T. A., Clow, G. D., Cheng, H., Edwards, R. L., Sigl, M., McConnell, J. R., and Taylor, K. C.
Abstract:: The West Antarctic Ice Sheet Divide (WAIS Divide, WD) ice core is a newly drilled, high-accumulation deep ice core that provides Antarctic climate records of the past ~68 ka at unprecedented temporal resolution. The upper 2850 m (back to 31.2 ka BP) have been dated using annual-layer counting. Here we...
Resource Type:: Article

ScholarsArchive@OSU

Simulated Evolution of Protein-Protein Interaction Networks with Realistic Topology

Comparison of fixatives and fixation time for PCR detection of Mycobacterium in zebrafish Danio rerio

What the Inbred Scandinavian Wolf Population Tells Us about the Nature of Conservation

CoastColour Round Robin data sets: a database to evaluate the performance of algorithms for the retrieval of water quality parameters in coastal waters

Comparing statistical techniques to classify the structure of mountain forest stands using CHM-derived metrics in Trento province (Italy)

Long-distance migration of prey synchronizes demographic rates of top predators across broad spatial scales

A bioenergetics model to evaluate demographic consequences of disturbance in marine mammals applied to gray whales

Effects of Cu/Zn Superoxide Dismutase (sod1) Genotype and Genetic Background on Growth, Reproduction and Defense in Biomphalaria glabrata

Viewing forests through the lens of complex systems science

The WAIS Divide deep ice core WD2014 chronology – Part 1: Methane synchronization (68–31 kaBP) and the gas age–ice age difference

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