Index Catalog // ScholarsArchive@OSU

High-Density SNP Genotyping of Tomato (Solanum lycopersicum L.) Reveals Patterns of Genetic Variation Due to Breeding

Creator:: Sim, Sung-Chur, Van Deynze, Allen, Stoffel, Kevin, Douches, David S., Zarka, Daniel, Ganal, Martin W., Chetelat, Roger T., Hutton, Samuel F., Scott, John W., Gardner, Randolph G., Panthee, Dilip R., Mutschler, Martha, Myers, James R., and Francis, David M.
Abstract:: The effects of selection on genome variation were investigated and visualized in tomato using a high-density single nucleotide polymorphism (SNP) array. 7,720 SNPs were genotyped on a collection of 426 tomato accessions (410 inbreds and 16 hybrids) and over 97% of the markers were polymorphic in the entire collection. Principal...
Resource Type:: Article
Full Text:: (Solanum lycopersicum L.) Reveals Patterns of Genetic Variation Due to Breeding Sung-Chur Sim1, Allen Van

Circumpolar Diversity and Geographic Differentiation of mtDNA in the Critically Endangered Antarctic Blue Whale (Balaenoptera musculus intermedia)

Creator:: Sremba, Angela L., Hancock-Hanser, Brittany, Branch, Trevor A., LeDuc, Rick L., and Baker, C. Scott
Abstract:: The Antarctic blue whale (Balaenoptera musculus intermedia) was hunted to near extinction between 1904 and 1972, declining from an estimated initial abundance of more than 250,000 to fewer than 400. Here, we describe mtDNA control region diversity and geographic differentiation in the surviving population of the Antarctic blue whale, using...
Resource Type:: Article
Full Text:: ) Angela L. Sremba1*, Brittany Hancock-Hanser2, Trevor A. Branch3, Rick L. LeDuc2, C. Scott Baker1 1

Assessing De Novo transcriptome assembly metrics for consistency and utility

Creator:: O’Neil, Shawn T. and Emrich, Scott J.
Abstract:: Background: Transcriptome sequencing and assembly represent a great resource for the study of non-model species, and many metrics have been used to evaluate and compare these assemblies. Unfortunately, it is still unclear which of these metrics accurately reflect assembly quality. Results: We simulated sequencing transcripts of Drosophila melanogaster. By assembling...
Resource Type:: Article
Full Text:: for consistency and utility Shawn T O’Neil1,2 and Scott J Emrich2* Abstract Background

High-Throughput Sequencing of Arabidopsis microRNAs : Evidence for Frequent Birth and Death of MIRNA Genes

Creator:: Fahlgren, Noah, Howell, Miya D., Kasschau, Kristin D., Sullivan, Christopher M., Cumbie, Jason S., Givan, Scott A., Law, Theresa F., Grant, Sarah R., Dangl, Jeffrey L., and Carrington, James C.
Abstract:: In plants, microRNAs (miRNAs) comprise one of two classes of small RNAs that function primarily as negative regulators at the posttranscriptional level. Several MIRNA genes in the plant kingdom are ancient, with conservation extending between angiosperms and the mosses, whereas many others are more recently evolved. Here, we use deep...
Resource Type:: Article
Full Text:: . Kasschau1, Elisabeth J. Chapman1,2, Christopher M. Sullivan1, Jason S. Cumbie1, Scott A. Givan1, Theresa F

Genome-Wide Profiling and Analysis of Arabidopsis siRNAs

Creator:: Kasschau, Kristin D., Fahlgren, Noah, Chapman, Elisabeth J., Sullivan, Christopher M., Cumbie, Jason S., Givan, Scott A., and Carrington, James C.
Abstract:: Eukaryotes contain a diversified set of small RNA-guided pathways that control genes, repeated sequences, and viruses at the transcriptional and posttranscriptional levels. Genome-wide profiles and analyses of small RNAs, particularly the large class of 24-nucleotide (nt) short interfering RNAs (siRNAs), were done for wild-type Arabidopsis thaliana and silencing pathway mutants...
Resource Type:: Article
Full Text:: siRNAs Kristin D. Kasschau 1,2 , Noah Fahlgren 1,2,3 , Elisabeth J. Chapman 1,2,3 , Christopher M

Critically low abundance and limits to human-related mortality for the Maui's dolphin

Creator:: Hamner, Rebecca M., Wade, Paul, Oremus, Marc, Stanley, Martin, Brown, Phillip, Constantine, Rochelle, and Baker, C. Scott
Abstract:: The New Zealand endemic Maui’s dolphin Cephalorhynchus hectori maui is characterized by several life history traits thought to be important predictors of extinction risk in marine mammals, including a slow rate of reproduction, small geographic range, small group size, and coastal distribution. We continued the genetic monitoring of the remnant...
Resource Type:: Article
Full Text:: abundance and limits to human- related mortality for the Maui’s dolphin Rebecca M. Hamner1,2,*, Paul Wade3

Nested scales of spatial heterogeneity in juvenile walleye pollock Theragra chalcogramma in the southeastern Bering Sea

Creator:: Benoit-Bird, Kelly J., McIntosh, Neal E., and Heppell, Scott A.
Abstract:: We sought to characterize the distribution of juvenile walleye pollock Theragra chalcogramma in an area of intense predator-prey interactions and to describe habitat features that lead to their observed distributions. The distribution of juvenile walleye pollock around the Pribilof Islands in the southeastern Bering Sea in 2008 and 2009 was...
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Full Text:: N O V A P ai re d t -t es t 20 09 − 20 08 O S − M S S L − M S S L − O S 20 09 − 20

Mapping Migratory Bird Prevalence Using Remote Sensing Data Fusion

Creator:: Swatantran, Anu, Dubayah, Ralph, Goetz, Scott, Hofton, Michelle, Betts, Matthew G., Sun, Mindy, Simard, Marc, and Holmes, Richard
Abstract:: Background: Improved maps of species distributions are important for effective management of wildlife under increasing anthropogenic pressures. Recent advances in lidar and radar remote sensing have shown considerable potential for mapping forest structure and habitat characteristics across landscapes. However, their relative efficacies and integrated use in habitat mapping remain largely...
Resource Type:: Article
Full Text:: Remote Sensing Data Fusion Anu Swatantran1*, Ralph Dubayah , Scott Goetz , Michelle Hofton , Matthew G

Predicting foundation bunchgrass species abundances: model-assisted decision-making in protected-area sagebrush steppe

Creator:: Rodhouse, Thomas J., Irvine, Kathryn M., Sheley, Roger L., Smith, Brenda S., Hoh, Shirley, Esposito, Daniel M., and Mata-Gonzalez, Ricardo
Abstract:: Foundation species are structurally dominant members of ecological communities that can stabilize ecological processes and influence resilience to disturbance and resistance to invasion. Being common, they are often overlooked for conservation but are increasingly threatened from land use change, biological invasions, and over‐exploitation. The pattern of foundation species abundances over...
Resource Type:: Article
Full Text:: ., Sheley, R. L., Smith, B. S., Hoh, S., Esposito, D. M., & Mata-Gonzalez, R. (2014). Predicting foundation

Catalyst selective and regiodivergent O- to C- or N-carboxyl transfer of pyrazolyl carbonates: synthetic and computational studies

Creator:: Gould, Eoin, Walden, Daniel M., Kasten, Kevin, Johnston, Ryne C., Wu, Jiufeng, Slawin, Alexandra M., Mustard, Thomas J. L., Johnston, Brittany, Davies, Tony, Cheong, Paul Ha-Yeon, and Smith, Andrew D.
Abstract:: The regiodivergent O- to C- or N-carboxyl transfer of pyrazolyl carbonates is described, with DMAP giving preferential N-carboxylation and triazolinylidenes promoting selective C-carboxylation (both with up to >99 : 1 regioselectivity). An enantioselective O- to C-carboxyl variant using NHC catalysis is demonstrated (up to 92% ee), while mechanistic and DFT studies outline...
Resource Type:: Article
Full Text:: Daniel M. Walden,b Kevin Kasten,a Ryne C. Johnston,b Jiufeng Wu,a Alexandra M. Z. Slawin,a Thomas J. L

ScholarsArchive@OSU

High-Density SNP Genotyping of Tomato (Solanum lycopersicum L.) Reveals Patterns of Genetic Variation Due to Breeding

Circumpolar Diversity and Geographic Differentiation of mtDNA in the Critically Endangered Antarctic Blue Whale (Balaenoptera musculus intermedia)

Assessing De Novo transcriptome assembly metrics for consistency and utility

High-Throughput Sequencing of Arabidopsis microRNAs : Evidence for Frequent Birth and Death of MIRNA Genes

Genome-Wide Profiling and Analysis of Arabidopsis siRNAs

Critically low abundance and limits to human-related mortality for the Maui's dolphin

Nested scales of spatial heterogeneity in juvenile walleye pollock Theragra chalcogramma in the southeastern Bering Sea

Mapping Migratory Bird Prevalence Using Remote Sensing Data Fusion

Predicting foundation bunchgrass species abundances: model-assisted decision-making in protected-area sagebrush steppe

Catalyst selective and regiodivergent O- to C- or N-carboxyl transfer of pyrazolyl carbonates: synthetic and computational studies

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