Index Catalog // ScholarsArchive@OSU

ARK: Aggregation of Reads by K-Means for Estimation of Bacterial Community Composition

Creator:: Koslicki, David, Chatterjee, Saikat, Shahrivar, Damon, Walker, Alan W., Francis, Suzanna C., Fraser, Louise J., Vehkaperä, Mikko, Lan, Yueheng, and Corander, Jukka
Abstract:: Motivation: Estimation of bacterial community composition from high-throughput sequenced 16S rRNA gene amplicons is a key task in microbial ecology. Since the sequence data from each sample typically consist of a large number of reads and are adversely impacted by different levels of biological and technical noise, accurate analysis of...
Resource Type:: Article
Full Text:: phase. The aggregation of reads is a pre-processing approach where we use a standard K-means clustering

A Comparison of the Spatial Linear Model to Nearest Neighbor (k-NN) Methods for Forestry Applications

Creator:: Ver Hoef, Jay M. and Temesgen, Hailemariam
Abstract:: Forest surveys provide critical information for many diverse interests. Data are often collected from samples, and from these samples, maps of resources and estimates of aerial totals or averages are required. In this paper, two approaches for mapping and estimating totals; the spatial linear model (SLM) and k-NN (k-Nearest Neighbor)...
Resource Type:: Article
Full Text:: either imputes the ‘‘closest’’ one directly as a prediction (k~1), or forms a weighted average as a

Direct numerical simulation results for turbulent hydrogen/air flame: mixture-averaged diffusion model

Creator:: Fillo, Aaron J., Schlup, Jason, Beardsell, Guillaume, Blanquart, Guillaume, and Niemeyer, Kyle E.
Abstract:: This data contains results from direct numerical simulations of three-dimensional, premixed, hydrogen/air flames, using the mixture-averaged diffusion model. We performed the simulations using the finite-difference code NGA; simulation details are described completely in the associated article.
Resource Type:: Dataset

Assessing the impact of multicomponent diffusion in direct numerical simulations of premixed, high-Karlovitz, turbulent flames: n-heptane data

Creator:: Fillo, Aaron J., Schlup, Jason, Blanquart, Guillaume, and Niemeyer, Kyle E.
Abstract:: This data contains results from direct numerical simulations of premixed, three-dimensional, turbulent n-heptane/air flames, using the multicomponent and mixture-averaged diffusion models. In particular, this dataset contains information about diffusion flux angles and magnitudes. We performed the simulations using the finite-difference code NGA; simulation details are described completely in the associated...
Resource Type:: Dataset

Assessing the impact of multicomponent diffusion in direct numerical simulations of premixed, high-Karlovitz, turbulent flames: hydrogen data

Creator:: Fillo, Aaron J., Schlup, Jason, Blanquart, Guillaume, and Niemeyer, Kyle E.
Abstract:: This data contains results from direct numerical simulations of premixed, two-dimensional unsteady and three-dimensional, turbulent hydrogen/air flames, using the multicomponent and mixture-averaged diffusion models. In particular, this dataset contains information about diffusion flux angles and magnitudes. We performed the simulations using the finite-difference code NGA; simulation details are described completely...
Resource Type:: Dataset

Direct numerical simulation results for turbulent hydrogen/air flame: multicomponent diffusion model

Creator:: Fillo, Aaron J., Schlup, Jason, Beardsell, Guillaume, Blanquart, Guillaume, and Niemeyer, Kyle E.
Abstract:: This data contains results from direct numerical simulations of three-dimensional, premixed, hydrogen/air flames, using the multicomponent diffusion model. We performed the simulations using the finite-difference code NGA; simulation details are described completely in the associated article.
Resource Type:: Dataset

Re-coding of the Dataset for Status of the European Green Crab, Carcinus maenas, in Oregon and Washington coastal Estuaries in 2019 and 2020

Creator:: Sims, Kimberly, Behrens Yamada, Sylvia, Schooler, Shon, Heller, Renee, Donaldson, Luke, Takacs, Graham T., Randall, Andrea, and Buffington, Chelsey
Abstract:: European green crab, Carcinus maenas, trapped and collected in coastal Oregon and Washington coastal estuaries during the 2019. Data for individual crabs include: estuary, site, date of collection, sex, carapace width, weight, molt stage (color of abdomen), missing limbs, estimated year class, method of collection, and name of collector. This...
Resource Type:: Dataset

LidarBoX: a 3D-printed, open-source altimeter system to improve photogrammetric accuracy for off-the-shelf drones

Creator:: Beirlich, K. C., Wengrove, Drummond, Bird, Clara, Davidson, Robert, Chandler, Todd, Torres, Leigh, and Cantor, Mauricio
Abstract:: Drones, or unoccupied aircraft systems (UAS), have become increasingly accessible and a widely used tool across disciplines. Off-the-shelf drones have, for instance, popularized and advanced wildlife research by providing a privileged birds’-eye view for collecting high-resolution imagery for morphometric and behavioral sampling, which was otherwise costly or impractical. Biologically meaningful...
Resource Type:: Dataset

Irrigation decision survey data for the Willamette Water 2100 project

Creator:: Jaeger, William K.
Abstract:: These data were collected using a survey of a sample of farmers in the Willamette Valley. The objective was to estimate a relationship between the decision to irrigate a field (one with an existing irrigation water right), and factors such as land characteristics, climate, current weather, and market prices. The...
Resource Type:: Dataset

Dataset associated with Long-Term Effects of Fuel Reduction Treatments on Surface Fuel Loading in the Blue Mountains of Oregon

Creator:: Morici, Kat
Abstract:: Dataset contains a 2015 partial re-measurement of the Blue Mountains Fire and Fire Surrogate study. 8 plots were measured from each of the 16 units, selected randomly from all plots in each unit. Species are recorded using USDA plant codes, "UNKN" is unknown species. For fine fuels, 3 Brown's transects...
Resource Type:: Dataset

ScholarsArchive@OSU

ARK: Aggregation of Reads by K-Means for Estimation of Bacterial Community Composition

A Comparison of the Spatial Linear Model to Nearest Neighbor (k-NN) Methods for Forestry Applications

Direct numerical simulation results for turbulent hydrogen/air flame: mixture-averaged diffusion model

Assessing the impact of multicomponent diffusion in direct numerical simulations of premixed, high-Karlovitz, turbulent flames: n-heptane data

Assessing the impact of multicomponent diffusion in direct numerical simulations of premixed, high-Karlovitz, turbulent flames: hydrogen data

Direct numerical simulation results for turbulent hydrogen/air flame: multicomponent diffusion model

Re-coding of the Dataset for Status of the European Green Crab, Carcinus maenas, in Oregon and Washington coastal Estuaries in 2019 and 2020

LidarBoX: a 3D-printed, open-source altimeter system to improve photogrammetric accuracy for off-the-shelf drones

Irrigation decision survey data for the Willamette Water 2100 project

Dataset associated with Long-Term Effects of Fuel Reduction Treatments on Surface Fuel Loading in the Blue Mountains of Oregon

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