Understanding connectivity among exploited populations is critical to their sustainable management and long-term viability. In the marine environment, estimates of connectivity often rely on the use of genetic markers, as dispersal primarily occurs during a planktonic larval phase which is difficult to track using direct methods. In this thesis, we...
The California Current Ecosystem (CCE) is a dynamic marine ecosystem from which many socioeconomically important fisheries species are harvested. In this thesis, a genotyping-by-sequencing (GBS) approach was used to examine genomic variation in an early life stage of the Dungeness crab (Cancer magister), which constitutes the most valuable single-species commercial...
An inextricable link exists between dams and human development in the Pacific Northwest, but they can fragment rivers and reduce genetic connectivity for freshwater and anadromous fishes. Since the early-twentieth century, a series of hydropower and irrigation dams on the mainstem Klamath River, California, has fragmented migratory corridors and eliminated...
Evidence for reduced reproductive success (RS) of wild spawning hatchery-reared fish invites serious consideration with regard to the detrimental effects on subsequent generations of wild populations. Mate choice was evaluated as a potential mechanism contributing to these observed RS differences using a previous pedigree of wild spawning hatchery-reared and wild...
The introduction of non-native species can negatively impact native species through reduced genetic fitness resulting from hybridization. The lack of spatiotemporal data of hybrids occurrences makes assessing hybridization risk difficult. Here, I developed a spatially-explicit GIS Hybridization Risk Model (HRM) between native ESA-listed Bull Trout and introduced Brook Trout by...
The genetic basis of adaptation is complex as many fitness-related traits are quantitative and likely influenced by multiple genes with variable effects across different selective environments. One important adaptation for anadromous Chinook salmon (Oncorhynchus tshawytscha) is the time at which individuals return to natal breeding sites within a reproductive season....
Despite the high economic and social value of Dungeness crab, no stock assessment work has been conducted on coastal Dungeness crab populations in Oregon. The fishery is currently managed based on a sex, size, and season strategy (e.g. males of a minimum size fished during specified months). It is estimated...
Humpback whales (Megaptera novaeangliae, Borowski 1781) in the North Pacific migrate from mid- to high- latitude summer feeding grounds along the Pacific Rim, including areas off the coasts of the U.S., Canada, Russia and eastern Asia, to tropical breeding grounds each winter along Pacific coasts of Mexico and Central America...
Many economically important Pacific salmon fisheries along the west coast of North America are mixed-stock, recreational systems, in which managers strive to account for interactions between fish, anglers, and management policy while balancing fishery access against conservation of vulnerable stocks. Specific challenges facing fisheries managers include limited control over angling...
The critically endangered Maui's dolphin (Cephalorhynchus hectori maui) and the endangered Hector's dolphin (C. h. hectori) are endemic to the coastal waters of New Zealand, where their primary threat is fisheries-related mortality. The Maui's dolphin is among the most critically endangered cetaceans in the world, with its remnant population primarily...