Index Catalog // ScholarsArchive@OSU

Creator:: Weitemier, Kevin, Straub, Shannon C. K., Fishbein, Mark, and Liston, Aaron
Abstract:: Despite knowledge that concerted evolution of high-copy loci is often imperfect, studies that investigate the extent of intragenomic polymorphisms and comparisons across a large number of species are rarely made. We present a bioinformatic pipeline for characterizing polymorphisms within an individual among copies of a high-copy locus. Results are presented...
Resource Type:: Article

Creator:: Straub, Shannon C. K., Cronn, Richard C., Edwards, Christopher, Fishbein, Mark, and Liston, Aaron
Abstract:: Horizontal gene transfer (HGT) of DNA from the plastid to the nuclear and mitochondrial genomes of higher plants is a common phenomenon; however, plastid genomes (plastomes) are highly conserved and have generally been regarded as impervious to HGT. We sequenced the 158 kb plastome and the 690 kb mitochondrial genome...
Resource Type:: Article

Creator:: Weitemier, Kevin, Straub, Shannon C. K., Cronn, Richard C., Fishbein, Mark, Schmickl, Roswitha, McDonnell, Angela, and Liston, Aaron
Abstract:: PREMISE OF THE STUDY: Hyb-Seq, the combination of target enrichment and genome skimming allows simultaneous data collection for low-copy nuclear genes and high-copy genomic targets for plant systematics and evolution studies. METHODS AND RESULTS: Genome and transcriptome assemblies for milkweed (Asclepias syriaca) were utilized to design enrichment probes for 3385...
Resource Type:: Article
Full Text:: skimming for plant phylogenomics 1 Kevin Weitemier2,7, Shannon C.K. Straub2,7, Richard C. Cronn3, Mark

Creator:: Schmickl, Roswitha, Liston, Aaron, Zeisek, Vojtěch, Oberlander, Kenneth, Weitemier, Kevin, Straub, Shannon C. K., Cronn, Richard C., Dreyer, Léanne L., and Suda, Jan
Abstract:: Phylogenetics benefits from using a large number of putatively independent nuclear loci and their combination with other sources of information, such as the plastid and mitochondrial genomes. To facilitate the selection of orthologous low‐copy nuclear (LCN) loci for phylogenetics in nonmodel organisms, we created an automated and interactive script to...
Resource Type:: Article
Full Text:: : Schmickl, R. , Liston, A. , Zeisek, V. , Oberlander, K. , Weitemier, K. , Straub, S. C., Cronn, R. C

Creator:: Dugas, Diana V., Hernandez, David, Koenen, Erik J. M., Schwarz, Erika, Straub, Shannon, Hughes, Colin E., Jansen, Robert K., Nageswara-Rao, Madhugiri, Staats, Martijn, Trujillo, Joshua T., Hajrah, Nahid H., Alharbi, Njud S., Al-Malki, Abdulrahman L., Sabir, Jamal S. M., and Bailey, C. Donovan
Abstract:: The Leguminosae has emerged as a model for studying angiosperm plastome evolution because of its striking diversity of structural rearrangements and sequence variation. However, most of what is known about legume plastomes comes from few genera representing a subset of lineages in subfamily Papilionoideae. We investigate plastome evolution in subfamily...
Resource Type:: Article

Creator:: Coble, Ashley A., Flinders, Camille A., Homyack, Jessica A., Penaluna, Brooke E., Cronn, Richard C., and Weitemier, Kevin
Abstract:: Environmental DNA (eDNA) is an emerging biological monitoring tool that can aid in assessing the effects of forestry and forest manufacturing activities on biota. Monitoring taxa across broad spatial and temporal scales is necessary to ensure forest management and forest manufacturing activities meet their environmental goals of maintaining biodiversity. Our...
Resource Type:: Article

ScholarsArchive@OSU