We have developed a method for determining the response of a static, partially ordered ensemble of molecules to various types of electromagnetic probes. In our formalism a physical model is constructued for the orientational distribution function, which is represented as a volume integral over a set of weighting functions. Procedures...
Heavy biodegraded crude oils have larger numbers of coeluting compounds than non- biodegraded oils, and they are typically not resolved with conventional gas chromatography (GC). This unresolved complex mixture (UCM) has been investigated using comprehensive two- dimensional gas chromatography-time-of-flight mass spectrometry (GCxGC-ToFMS) within a set of biodegraded petroleums derived from...
Bacteriophage S-CRM01 has been isolated from a freshwater strain of Synechococcus and shown to
be present in the upper Klamath River valley in northern California and Oregon. The genome of this
lytic T4-like phage has a 178,563 bp circular genetic map with 297 predicted protein-coding genes
and 33 tRNA genes...
A light, simple, and fairly inexpensive hand-launched freely falling probe for measuring temperature microstructure was built. The circuitry operates under pressure in a Freon environment; low-power integrated circuits are used as components. The probe is assembled from plastic pipe and fittings and recovered with monofilament fishing line. Standard XBTs are...
Purpose – The purpose of this paper is to develop an exclusive review framework for Performance Prism.
Design/methodology/approach - An extensive literature survey on performance measurement is used to identify the main aspects of the review in such systems. Various dimensions related to the characteristics of Performance Prism are explored....
Given image data of a fluid flow, the flow field, < u, v >, governing the evolution of the system can be estimated using a variational approach to optical flow. Assuming that the flow field governing the advection is the symplectic gradient of a stream function or the gradient of...
Increasing forest stress and tree mortality has been directly linked to combinations of drought and high temperatures. The climatic changes expected during the next decades – large increases in mean temperature, increased heat waves, and significant long-term regional drying in the western USA – will likely increase chronic forest stress...
The Alpine fault is the Pacific-Australian plate boundary in the South Island of New Zealand. This study analyzes 195 earthquakes recorded during the 6 month duration of the Southern Alps Passive Seismic Experiment (SAPSE) in 1995/1996 and two M₁. 5.0 earthquakes and aftershocks in 1997, which occurred close to the...
An indirect fluorescent antibody test (IFAT) was developed for detection of the rickettsia that was causing epizootics among salmonids cultured in seawater net-pens in southern Chile. Antiserum against the rickettsial agent was produced in New Zealand white rabbits with a preparation grown in antibiotic-free chinook salmon embryo (CHSE-214) cell cultures...
On 3 April 2001, a 20 kg point source of fluorescein dye was released 30 m above the bottom of the active summit caldera of Vailulu’u submarine volcano, Samoa. Vailulu’u crater is 2000 m wide and at water depths of 600–1000 m, with the bottom 200 m completely enclosed; it...
Surface transient storage (STS) and hyporheic transient storage (HTS) have functional significance in stream ecology and hydrology. Currently, tracer techniques couple STS and HTS effects on stream nutrient cycling; however, STS resides in localized areas of the surface stream and HTS resides in the hyporheic zone. These contrasting environments result...
A stratigraphy-based chronology for the North Greenland Eemian Ice Drilling (NEEM) ice core has been derived by transferring the annual layer counted Greenland Ice Core Chronology 2005 (GICC05) and its model extension (GICC05modelext) from the NGRIP core to the NEEM core using 787 match points of mainly volcanic origin identified...
Groundwater–surface-water (GW-SW) interactions in streams are difficult to quantify because of heterogeneity in hydraulic and reactive processes across a range of spatial and temporal scales. The challenge of quantifying these interactions has led to the development of several techniques, from centimeter-scale probes to whole-system tracers, including chemical, thermal, and electrical...
Oregon State University’s recent response to the crisis in scholarly communications recognizes that teaching faculty must be involved in communicating an appropriate response to their faculty colleagues. As authors, editors, and peer reviewers, direct faculty action can encourage publishers to lower costs and can enhance the availability of research. The...
Given two rational maps φ and ψ on Ρ¹ of degree at least two, we study a symmetric, nonnegative real-valued pairing〈φ, ψ〉which is closely related to the canonical height functions hφ and hψ associated to these maps. Our main results show a strong connection between the value of〈φ, ψ〉and the...
Sandbars are ubiquitous, yet not well understood
beach features that change their position and shape in
response to changing wave conditions. We propose and test
a simple empirical model consisting of two coupled linear
differential equations that represents bar dynamics in terms
of wave forcing and two other state variables:...
Rising atmospheric [CO₂], cₐ, is expected to affect stomatal regulation of leaf gas-exchange of woody plants, thus influencing energy fluxes as well as carbon (C), water, and nutrient cycling of forests. Researchers have proposed various strategies for stomatal regulation of leaf gas-exchange that include maintaining a constant leaf internal [CO₂],...
This paper presents a case study on the application of a dynamic framework for the intelligent
control of flooding in the Boise River system in Idaho. This framework couples a robust
and numerically efficient hydraulic routing approach with the popular multi-objective Non-dominated
Sorting Genetic Algorithm II (NSGA-II). The novelty of...
A combination of batch fermentations and genome scale flux balance analysis were used to identify and quantify the rate limiting reactions in the xylulose transport and utilization pathway. Xylulose phosphorylation by xylulokinase was identified as limiting in wild type Saccharomyces cerevisiae, but transport became limiting when xylulokinase was upregulated. Further...
A fluorescent dye tracer was injected into the
pycnocline on the Oregon shelf at a depth of 9–10 m. It
spread rapidly cross-shelf as two distinct layers, one above
the other in the water column, split by interleaving dye-free
water. The vertical scale of these layers, and associated
density steps,...
Tornadoes represent a unique natural hazard because of the very low probability of
occurrence, short warning times (on the order of only a few minutes), and the intense and
destructive forces imposed on engineered and non-engineered buildings. The very low-probability very high-consequence nature of a tornado strike makes designing for...
Soils are globally significant sources and sinks of
atmospheric CO₂. Increasing the resolution of soil carbon
turnover estimates is important for predicting the response of
soil carbon cycling to environmental change. We show that
soil carbon turnover times can be more finely resolved using
a dual isotope label like the...
Dramatic declines of the native northeast Pacific mud shrimp, Upogebia pugettensis over the last three decades have occurred in response to intense infestations by the Asian bopyrid isopod parasite, Orthione griffenis, that was introduced in the 1980s. We report herein the arrival of the Asian mud shrimp, Upogebia major, in...
A new instrument package for measuring physical (temperature, salinity, and depth) as well as optical (absorption and attenuation at nine wavelength) parameters using SCUBA is described. The package is attached to the SCUBA bottle and allows for sampling very close to the sediment–water and water–air interfaces. This package can also...
Distributed temperature data are used as input and
as calibration data for an energy based temperature model
of a first order stream in Luxembourg. A DTS (Distributed
Temperature Sensing) system with a fiber optic cable of
1500m was used to measure stream water temperature with
1m resolution each 2 min....
Crack bridging is an important source of crack propagation resistance in many materials and the bridging stress distribution as a function of crack opening displacement is widely believed to represent a true material property uninfluenced by sample geometry, loading conditions, and other extrinsic factors. Accordingly, accurate measurement of the bridging...
In this study a model system consisting of the three-dimensional General Estuarine Transport Model (GETM) and the third generation wind wave model SWAN was developed. Both models were coupled in two-way mode. The effects of waves were included into the ocean model by implementing the depth-dependent Radiation stress formulation (RS)...
Recent comparative studies across sex-changing animals have found that the relative size and age at sex change are strikingly invariant. In particular, 91%–97% of the variation in size at sex change across species can be explained by the simple rule that individuals change sex when they reach 72% of their...
This paper presents a dimensional analysis for determining optimal flow discharge and optimal penstock diameter when designing impulse and reaction turbines for hydropower systems. The aim of this analysis is to provide general insights for minimizing water consumption when producing hydropower. This analysis is based on the geometric and hydraulic...
A high prevalence of vertebral deformities has been observed in various fishes, especially cyprinids, from certain regions of the Willamette River for many years. One proposed source of these deformities is exposure to toxicants. Histological evaluation of affected chiselmouth Acrocheilus alutaceus revealed that all lesions associated with vertebrae were associated...
Acidified waters are impacting commercial oyster
production in the U.S. Pacific Northwest, and favorable
carbonate chemistry conditions are predicted to become
less frequent. Within 48 h of fertilization, unshelled Pacific
oyster (Crassostrea gigas) larvae precipitate roughly 90% of
their body weight as calcium carbonate. We measured stable
carbon isotopes in...
Given the abundance of images related to operations that are being captured and stored, it behooves firms to innovate systems using image processing to improve operational performance that refers to any activity that can save labor cost. In this paper, we use deep learning techniques, combined with classic image/signal processing...
Observations of air and ground temperatures collected between 1993 and 2004 from Emigrant Pass Geothermal Climate Observatory in northwestern Utah are analyzed to understand the relationship between these two quantities. The influence of surface air temperature (SAT), incident solar radiation, and snow cover on surface ground temperature (SGT) variations are...
Adaptive governance is an emergent form of environmental governance that is increasingly called upon by scholars and
practitioners to coordinate resource management regimes in the face of the complexity and uncertainty associated with rapid
environmental change. Although the term “adaptive governance” is not exclusively applied to the governance of social-ecological...
This article is part of a collection of articles dealing with the endeavors and projects of support staff in Oregon libraries. Describes an ordinary workday at a specialized academic branch library.
Concurrent measurements of predator and prey δ¹⁵N isotope values demonstrated that a cross-shelf
isotopic gradient can propagate through a marine food web from forage species to top-tier predators and
indicate foraging areas at a scale of tens of kilometers. We measured δ¹³C and δ¹⁵N in muscle tissues of
thick-billed murres...
BACKGROUND: Gas stoves emit pollutants that are respiratory irritants. U.S. children under age 6 who live in homes where gas stoves are used for cooking or heating have an increased risk of asthma, wheeze and reduced lung function. Yet few studies have examined whether using ventilation when operating gas stoves...
Caribbean coral reefs have deteriorated substantially over the past 30 years, which is broadly attributable to the effects of global climate change. In the same time, Indo-Pacific reefs maintain higher coral cover and typically recover rapidly after disturbances. This difference in reef resilience is largely due to much higher coral...
Genes specifying the thiamin monophos¬phate phosphatase and adenylated thiazole diphosphatase steps in fungal and plant thiamin biosynthesis remain unknown, as do genes for thia¬min diphosphate (ThDP) hydrolysis in thiamin metabolism. A distinctive Nudix domain fused to thia¬min di¬phos¬phokin¬ase (Tnr3) in Schizo¬sacc¬¬h¬aromyces pombe was evaluated as a candidate for these funct¬ions....
Genes specifying the thiamin monophosphate phosphatase and adenylated thiazole diphosphatase
steps in fungal and plant thiamin biosynthesis remain unknown, as do genes for thiamin diphosphate
(ThDP) hydrolysis in thiamin metabolism. A distinctive Nudix domain fused to thiamin diphosphokinase
(Tnr3) in Schizosaccharomyces pombe was evaluated as a candidate for these functions....
Background:
In the Ganges Delta, chronic arsenic poisoning is a health concern affecting millions of people who rely on groundwater as their potable water source. The prevalence of anemia is also high in this region, particularly among women. Moreover, arsenic is known to affect heme synthesis and erythrocytes and the...
BACKGROUND: Poorly ventilated combustion stoves and pollutants emitted from combustion stoves increase the risk of acute lower respiratory illnesses (ALRI) in children living in developing countries but few studies have examined these issues in developed countries. Our objective is to investigate behaviors related to gas stove use, namely using them...
To measure organismal coherence in a pelagic ecosystem, we used moored sensors to describe the vertical dynamics of each step in the food chain in shelf waters off the west shore of Oahu, Hawaii. Horizontally extensive, intense aggregations of phytoplankton, zooplankton, and micronekton exhibited strong diel patterns in abundance and...
We examined the characteristics of biological patches at four different locations to assess the relationship of patch vertical scale, amplitude, and persistence. In contrast to patches of larger animals, we found that the majority of coherent aggregations of plankton at each site were vertically compressed, with most smaller than 5m...
Abstract: Tide-topography interactions dominate the transfer of tidal energy from large to small scales. At present, it is poorly understood how low-mode internal tides reflect and scatter along the continental margins. Here, the coupling equations for linear tides model (CELT) are derived to determine the independent modal solutions to Laplace's...
Estimation of belowground carbon stocks in tropical wetland forests requires funding for laboratory analyses and suitable facilities, which are often lacking in developing nations where most tropical wetlands are found. It is therefore beneficial to develop simple analytical tools to assist belowground carbon estimation where financial and technical limitations are...
Background:
As Zika virus continues to spread, decisions regarding resource allocations to control the outbreak underscore the need for a tool to weigh policies according to their cost and the health burden they could avert. For example, to combat the current Zika outbreak the US President requested the allocation of...
An error in the calculation of the baroclinic pressure gradient term in the Princeton Ocean Model (POM) was identified while modeling the M₂ tidal current near its critical latitude in the southern Weddell Sea. The error arises from the present calculation of density, which involves the subtraction of a background...
This paper presents the design of a continuous-time ΔΣ modulator (CTDSM) to be used in an ultrasound beamformer for biomedical imaging. To achieve better resolution, the prototype modulator operates at 1.2 GHz. It incorporates a digital excess loop delay (ELD) compensation to replace the active adder in front of the...