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  • Coding sequence density estimation via topological pressure

    Creator:
    Koslicki, David and Thompson, Daniel J.
    Abstract:
    We give a new approach to coding sequence (CDS) density estimation in genomic analysis based on the topological pressure, which we develop from a well known concept in ergodic theory. Topological pressure measures the ‘weighted information content’ of a finite word, and incorporates 64 parameters which can be interpreted as...
    Resource Type:
    Article
    Full Text:
    packages have been developed (e.g. Augustus, Contrast, Exoniphy, Genemark HMM, FGenesh, GenSCAN, GeneID, N