Index Catalog // ScholarsArchive@OSU

Maize Metabolic Network Construction and Transcriptome Analysis

Creator:: Monaco, Marcela K., Sen, Taner Z., Dharmawardhana, Palitha D., Ren, Liya, Schaeffer, Mary, Naithani, Sushma, Amarasinghe, Vindhya, Thomason, Jim, Harper, Lisa, Gardiner, Jack, Cannon, Ethalinda K.S., Lawrence, Carolyn J., Ware, Doreen, and Jaiswal, Pankaj
Abstract:: A framework for understanding the synthesis and catalysis of metabolites and other biochemicals by proteins is crucial for unraveling the physiology of cells. To create such a framework for Zea mays L. subsp. mays (maize), we developed MaizeCyc, a metabolic network of enzyme catalysts, proteins, carbohydrates, lipids, amino acids, secondary...
Resource Type:: Article
Full Text:: @science.oregonstate.edu). Abbreviations: 16DAP, 16 d after pollination; CoA, coenzyme A; EC, Enzyme Commission; FGS, fi

A comparison of daily water use estimates derived from constant-heat sap-flow probe values and gravimetric measurements in pot-grown saplings.

Creator:: McCulloh, Katherine A., Winter, Klaus, Meinzer, Frederick C., Garcia, Milton, Aranda, Jorge, and Lachenbruch, Barbara
Abstract:: Use of Granier-style heat dissipation sensors to measure sap flow is common in plant physiology, ecology and hydrology. There has been concern that any change to the original Granier design invalidates the empirical relationship between sap flux density and the temperature difference between the probes. Here, we compared daily water...
Resource Type:: Article
Full Text:: : 138-150. Bucci, S.J., F.G. Scholz, G. Goldstein, EC. Meinzer, J. Hinojosa, W. Hoffmann and A

Conditions favouring Bromus tectorum dominance of endangered sagebrush steppe ecosystems

Creator:: Reisner, Michael D., Grace, James B., Pyke, David A., and Doescher, Paul S.
Abstract:: 1. Ecosystem invasibility is determined by combinations of environmental variables, invader attributes, disturbance regimes, competitive abilities of resident species and evolutionary history between residents and disturbance regimes. Understanding the relative importance of each factor is critical to limiting future invasions and restoring ecosystems. 2. We investigated factors potentially controlling Bromus...
Resource Type:: Article
Full Text:: . th ur be ria nu m P. s pi ca ta P. s ec un da A. h ym en oi de s H. c om at a K. m

Dynamics of nitrate production and removal as a function of residence time in the hyporheic zone

Creator:: Zarnetske, Jay P., Haggerty, Roy, Wondzell, Steven M., and Baker, Michelle A.
Abstract:: Biogeochemical reactions associated with stream nitrogen cycling, such as nitrification and denitrification, can be strongly controlled by water and solute residence times in the hyporheic zone (HZ). We used a whole‐stream steady state ¹⁵N‐labeled nitrate (¹⁵NO₃⁻) and conservative tracer (Cl⁻) addition to investigate the spatial and temporal physiochemical conditions controlling...
Resource Type:: Article
Full Text:: stream at gravel bar and representative distal HZ well (K2) electrical conductivity (EC) breakthrough

Assessing the carcinogenic potential of low-dose exposures to chemical mixtures in the environment: the challenge ahead

Creator:: Goodson, William H., III, Lowe, Leroy, Carpenter, David O., Gilbertson, Michael, Manaf Ali, Abdul, Lopez de Cerain Salsamendi, Adela, Lasfar, Ahmed, Carnero, Amancio, Azqueta, Amaya, Amedei, Amedeo, Charles, Amelia K., Collins, Andrew R., Ward, Andrew, Salzberg, Anna C., Colacci, Annamaria, Olsen, Ann-Karin, Berg, Arthur, Barclay, Barry J., Zhou, Binhua P., Blanco-Aparicio, Carmen, Baglole, Carolyn J., Dong, Chenfang, Mondello, Chiara, Hsu, Chia-Wen, Naus, Christian C., Yedjou, Clement, Curran, Colleen S., Laird, Dale W., Koch, Daniel C., Carlin, Danielle J., Felsher, Dean W., Roy, Debasish, Brown, Dustin G., Ratovitski, Edward, Ryan, Elizabeth P., Corsini, Emanuela, Rojas, Emilio, Moon, Eun-Yi, Laconi, Ezio, Marongiu, Fabio, Al-Mulla, Fahd, Chiaradonna, Ferdinando, Darroudi, Firouz, Martin, Francis L., Van Schooten, Frederik J., Goldberg, Gary S., Wagemaker, Gerard, Nangami, Gladys N., Calaf, Gloria M., Williams, Graeme P., Wolf, Gregory T., Koppen, Gudrun, Brunborg, Gunnar, Lyerly, H. Kim, Krishnan, Harini, Ab Hamid, Hasiah, Yasaei, Hemad, Sone, Hideko, Kondoh, Hiroshi, Salem, Hosni K., Hsu, Hsue-Yin, Park, Hyun Ho, Koturbash, Igor, Miousse, Isabelle R., Scovassi, A.Ivana, Klaunig, James E., Vondráček, Jan, Raju, Jayadev, Roman, Jesse, Wise, John P., Sr., Whitfield, Jonathan R., Woodrick, Jordan, Christopher, Joseph A., Ochieng, Josiah, Martinez-Leal, Juan F., Weisz, Judith, Kravchenko, Julia, Sun, Jun, Prudhomme, Kalan R., Narayanan, Kannan B., Cohen-Solal, Karine A., Moorwood, Kim, Gonzalez, Laetitia, Soucek, Laura, Jian, Le, D’Abronzo, Leandro S., Lin, Liang-Tzung, Li, Lin, Gulliver, Linda, McCawley, Lisa J., Memeo, Lorenzo, Vermeulen, Louis, Leyns, Luc, Zhang, Luoping, Valverde, Mahara, Khatami, Mahin, Romano, Maria F., Chapellier, Marion, Williams, Marc A., Wade, Mark, Manjili, Masoud H., Lleonart, Matilde E., Xia, Menghang, Gonzalez Guzman, Michael J., Karamouzis, Michalis V., Kirsch-Volders, Micheline, Vaccari, Monica, Kuemmerle, Nancy B., Singh, Neetu, Cruickshanks, Nichola, Kleinstreuer, Nicole, van Larebeke, Nik, Ahmed, Nuzhat, Ogunkua, Olugbemiga, Krishnakumar, P. K., Vadgama, Pankaj, Marignani, Paola A., Ghosh, Paramita M., Ostrosky-Wegman, Patricia, Thompson, Patricia A., Dent, Paul, Heneberg, Petr, Darbre, Philippa, Leung, Po Sing, Nangia-Makker, Pratima, Cheng, Qiang, Robey, R. Brooks, Al-Temaimi, Rabeah, Roy, Rabindra, Andrade-Vieira, Rafaela, Sinha, Ranjeet K., Mehta, Rekha, Vento, Renza, Di Fiore, Riccardo, Ponce-Cusi, Richard, Dornetshuber-Fleiss, Rita, Nahta, Rita, Castellino, Robert C., Palorini, Roberta, Hamid, Roslida A., Langie, Sabine A. S., Eltom, Sakina E., Brooks, Samira A., Ryeom, Sandra, Wise, Sandra S., Bay, Sarah N., Harris, Shelley A., Papagerakis, Silvana, Romano, Simona, Pavanello, Sofia, Eriksson, Staffan, Forte, Stefano, Casey, Stephanie C., Luanpitpong, Sudjit, Lee, Tae-Jin, Otsuki, Takemi, Chen, Tao, Massfelder, Thierry, Sanderson, Thomas, Guarnieri, Tiziana, Hultman, Tove, Dormoy, Valérian, Odero-Marah, Valerie, Sabbisetti, Venkata, Maguer-Satta, Veronique, Rathmell, W. Kimryn, Engström, Wilhelm, Decker, William K., Bisson, William H., Rojanasakul, Yon, Luqmani, Yunus, Chen, Zhenbang, and Hu, Zhiwei
Abstract:: Lifestyle factors are responsible for a considerable portion of cancer incidence worldwide, but credible estimates from the World Health Organization and the International Agency for Research on Cancer (IARC) suggest that the fraction of cancers attributable to toxic environmental exposures is between 7% and 19%. To explore the hypothesis that...
Resource Type:: Article

Ecophysiological interpretation of oxygen consumption rates and enzymatic activities of deep-sea copepods

Creator:: Thuesen, Erik V., Miller, Charles B., and Childress, James J.
Abstract:: We measured oxygen consumption rates, the activities of citrate synthase (CS) and lactate dehydrogenase (LDH) and protein contents for over 30 species of deep-sea pelagic Copepoda. The lowest oxygen consumption rates were measured in Euaugaptilus magnus and the highest rates were measured in Paraeuchaeta tonsa. Weight-specific oxygen consumption rates declined...
Resource Type:: Article
Full Text:: activity measurements. Citrate synthase (CS, EC 4.1.3.7), an important regulatory enzyme that functions

Adding yeasts with sugar to increase the number of effective insecticide classes to manage Drosophila suzukii (Matsumura) (Diptera: Drosophilidae) in cherry

Creator:: Knight, Alan L., Basoalto, Esteban, Yee, Wee, Hilton, Rick, and Kurtzman, Cletus P.
Abstract:: BACKGROUND: Drosophila suzukii is a major pest of cherry in the western United States. We evaluated whether the addition of sugary baits could improve the efficacy of two classes of insecticides not considered to be sufficiently effective for this pest, diamides and spinosyns, in laboratory and field trials in cherry....
Resource Type:: Article
Full Text:: EC formulationsof spinosadand0.004–0.127 g for cyantraniliprole respectively. Cane sugar (C&H Dark

Fractionation and subfunctionalization following genome duplications : mechanisms that drive gene content and their consequences

Creator:: Freeling, Michael, Scanlon, Michael J., and Fowler, John E.
Abstract:: A gene's duplication relaxes selection. Loss of duplicate, low-function DNA (fractionation) sometimes follows, mostly by deletion in plants, but mostly via the pseudogene pathway in fish and other clades with smaller population sizes. Subfunctionalization — the founding term of the Xfunctionalization lexicon — while not the general cause of differences...
Resource Type:: Article
Full Text:: , fractionation and the origin of regulatory novelty. Genetics 2004, 166:935-945. *2. Murat F, Zhang R, Guizard

A Dynamic Framework for Intelligent Control of River Flooding - A Case Study

Creator:: Leon, Arturo S., Kanashiro, Elizabeth A., Valverde, Rachelle, and Sridhar, Venkataramana
Abstract:: This paper presents a case study on the application of a dynamic framework for the intelligent control of flooding in the Boise River system in Idaho. This framework couples a robust and numerically efficient hydraulic routing approach with the popular multi-objective Non-dominated Sorting Genetic Algorithm II (NSGA-II). The novelty of...
Resource Type:: Article
Full Text:: e (m 3 ) 295 m3/s 680 m3/s 551 m3/s 40 m3/s 807 m3/s 935 m3/s 1063 m3/s 1190 m3/s 1318 m3

Population growth across heterogeneous environments: effects of harvesting and age structure

Creator:: Durant, Joel M., Hidalgo, Manuel, Rouyer, Tristan, Hjermann, Dag O., Ciannelli, Lorenzo, Eikeset, Anne Maria, Yaragina, Natalia, and Stenseth, N. C.
Abstract:: Population growth is affected by several factors such as climate, species interaction and harvesting pressure. However, additional complexity can arise if fishing increases the sensitivity to environmental variability. To predict the effects of fisheries and climate on marine populations, there is a need for improved understanding of how they affect...
Resource Type:: Article
Full Text:: tr an si en t e la st ic it y to r ec ru it m en t e t). L in e re p re se n ts th

ScholarsArchive@OSU

Maize Metabolic Network Construction and Transcriptome Analysis

A comparison of daily water use estimates derived from constant-heat sap-flow probe values and gravimetric measurements in pot-grown saplings.

Conditions favouring Bromus tectorum dominance of endangered sagebrush steppe ecosystems

Dynamics of nitrate production and removal as a function of residence time in the hyporheic zone

Assessing the carcinogenic potential of low-dose exposures to chemical mixtures in the environment: the challenge ahead

Ecophysiological interpretation of oxygen consumption rates and enzymatic activities of deep-sea copepods

Adding yeasts with sugar to increase the number of effective insecticide classes to manage Drosophila suzukii (Matsumura) (Diptera: Drosophilidae) in cherry

Fractionation and subfunctionalization following genome duplications : mechanisms that drive gene content and their consequences

A Dynamic Framework for Intelligent Control of River Flooding - A Case Study

Population growth across heterogeneous environments: effects of harvesting and age structure

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