Sudden oak death caused by the oomycete Phytophthora ramorum was first discovered in California toward the end of the 20th century and subsequently emerged on tanoak forests in Oregon before its first detection in 2001 by aerial surveys. The Oregon Department of Forestry has since monitored the epidemic and sampled...
Initially reported in California as the causal agent of sudden oak death (SOD), efforts to limit spread of Phytophthora ramorum in Oregon natural forests have concentrated on quarantine regulations and eradication of the pathogen from infested areas. P. ramorum has four clonal lineages: NA1; NA2; EU1; and EU2 (Grünwald et...
Many microbial, fungal, or oomcyete populations violate assumptions for population
genetic analysis because these populations are clonal, admixed, partially
clonal, and/or sexual. Furthermore, few tools exist that are specifically designed for
analyzing data from clonal populations, making analysis difficult and haphazard.
We developed the R package poppr providing unique tools...
A freely rising profiler was used to collect vertical microstructure profiles in the upper oceanic boundary layer under various atmospheric and sea conditions. Near the sea surface, the rate of viscous dissipation of turbulence kinetic energy, ϵ, exhibited a range of behaviors under different forcing conditions. Sometimes, ϵ was closely...
In multi-instance multi-label (MIML) learning, datasets are given in the form of bags, each of which contains multiple instances and is associated with multiple labels. This paper considers a novel instance clustering problem in MIML learning, where the bag labels are used as background knowledge to help group instances into...
Phylogenetics benefits from using a large number of putatively independent nuclear loci and their combination with other sources of information, such as the plastid and mitochondrial genomes. To facilitate the selection of orthologous low‐copy nuclear (LCN) loci for phylogenetics in nonmodel organisms, we created an automated and interactive script to...
In simple models, the nocturnal boundary layer is generally formulated in terms of eddy diffusivities, which
are functions of height above ground and boundary layer depth. This approach is modified in this study to
include ‘‘z-less’’ turbulence, which is formulated in terms of a stability-dependent mixing length and a Prandtl...
In Section 1 we will discuss multi-nucleon transfer reactions with light heavy ions, which can be thought of as competing with complete fusion at higher impact parameters. Quasi-elastic and multi-nucleon transfer reactions with the heaviest projectiles will be discussed in Section 2. In Section 3 we will cover recent developments...
A mathematical evidence-in a statistically significant sense-of a geometric scenario leading to criticality of the Navier-Stokes problem is presented. (C) 2012 American Institute of Physics. [http://dx.doi.org/10.1063/1.4752170]
Pythium species are important soilborne pathogens occurring in the forest nursery industry of the Pacific Northwest. However, little is known about their genetic diversity or population structure and it is suspected that isolates are moved among forest nurseries on seedling stock and shared field equipment. In order to address these...