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Preliminary Genomic Characterization of Ten Hardwood Tree Species from Multiplexed Low Coverage Whole Genome Sequencing

Creator:: Staton, Margaret, Best, Teodora, Khodwekar, Sudhir, Owusu, Sandra, Xu, Tao, Xu, Yi, Jennings, Tara, Cronn, Richard, Arumuganathan, A. Kathiravetpilla, Coggeshall, Mark, Gailing, Oliver, Liang, Haiying, Romero-Severson, Jeanne, Schlarbaum, Scott, and Carlson, John E.
Abstract:: Forest health issues are on the rise in the United States, resulting from introduction of alien pests and diseases, coupled with abiotic stresses related to climate change. Increasingly, forest scientists are finding genetic/genomic resources valuable in addressing forest health issues. For a set of ten ecologically and economically important native...
Resource Type:: Article
Full Text:: /journal.pone.0145031 December 23, 2015 1 / 14 OPEN ACCESS Citation: Staton M, Best T, Khodwekar S, Owusu S

Ungulate Browsing Maintains Shrub Diversity in the Absence of Episodic Disturbance in Seasonally-Arid Conifer Forest

Creator:: Pekin, Burak K., Wisdom, Michael J., Endress, Bryan A., Naylor, Bridgett J., and Parks, Catherine G.
Abstract:: Ungulates exert a strong influence on the composition and diversity of vegetation communities. However, little is known about how ungulate browsing pressure interacts with episodic disturbances such as fire and stand thinning. We assessed shrub responses to variable browsing pressure by cattle and elk in fuels treated (mechanical removal of...
Resource Type:: Article
Full Text:: , University of Tartu, Estonia Received July 24, 2013; Accepted December 13, 2013; Published January 23, 2014

Relationship Between Wildfire, Salvage Logging, and Occupancy of Nesting Territories by Northern Spotted Owls

Creator:: Clark, Darren A., Anthony, Robert G., and Andrews, Lawrence S.
Abstract:: The northern spotted owl (Strix occidentalis caurina) is one of the most intensively studied raptors in the world; however, little is known about the impacts of wildfire on the subspecies and how they use recently burned areas. Three large-scale wildfires in southwest Oregon provided an opportunity to investigate the short-term...
Resource Type:: Article
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Testing the odontocete acoustic prey debilitation hypothesis: No stunning results

Creator:: Benoit-Bird, Kelly J., Au, Whitlow W. L., and Kastelein, Ronald A.
Abstract:: The hypothesis that sounds produced by odontocetes can debilitate fish was examined. The effects of simulated odontocete pulsed signals on three species of fish commonly preyed on by odontocetes were examined, exposing three individuals of each species as well as groups of four fish to a high-frequency click of a...
Resource Type:: Article
Full Text:: hypothesis: No stunning results Kelly J. Benoit-Bird College of Oceanic and Atmospheric Sciences, Oregon

Room temperature multiferroic properties of single-phase (Bi₀.₉La₀.₁)FeO₃-Ba(Fe₀.₅Nb₀.₅)O₃ solid solution ceramics

Creator:: Paik, Hanjong, Hwang, Hosung, No, Kwangsoo, Kwon, Seunghwa, and Cann, David P.
Abstract:: The crystal structure and multiferroic properties of single-phase (Bi₀.₉La₀.₁)FeO₃–Ba(Fe₀.₅Nb₀.₅)O₃ ceramics were investigated. The rhombohedral-type structure of 1.0(Bi₀.₉La₀.₁)FeO₃) was transformed to a monoclinic-type structure for the 0.5(Bi₀.₉La₀.₁)FeO₃–0.5Ba(Fe₀.₅Nb₀.₅)O₃) composition. It shows the coexistence of ferroelectricity and magnetism at room temperature, represented by a high dielectric constant with ferroelectric hysteresis and clear magnetic...
Resource Type:: Article
Full Text:: „Bi0.9La0.1…FeO3–Ba„Fe0.5Nb0.5…O3 solid solution ceramics Hanjong Paik,a� Hosung Hwang, and Kwangsoo No

Genetic Polymorphism of Cytochrome P450 4F2, Vitamin E Level and Histological Response in Adults and Children with Nonalcoholic Fatty Liver Disease Who Participated in PIVENS and TONIC Clinical Trials

Creator:: Athinarayanan, Shaminie, Wei, Rongrong, Zhang, Min, Bai, Shaochun, Traber, Maret G., Yates, Katherine, Cummings, Oscar W., Molleston, Jean, Liu, Wanqing, and Chalasani, Naga
Abstract:: Vitamin E improved liver histology in children and adults with NAFLD who participated in TONIC and PIVENS clinical trials, but with significant inter-individual variability in its efficacy. Cytochrome P450 4F2 (CYP4F2) is the major enzyme metabolizing Vit E, with two common genetic variants (V433M, rs2108622 and W12G, rs3093105) found to...
Resource Type:: Article

ARK: Aggregation of Reads by K-Means for Estimation of Bacterial Community Composition

Creator:: Koslicki, David, Chatterjee, Saikat, Shahrivar, Damon, Walker, Alan W., Francis, Suzanna C., Fraser, Louise J., Vehkaperä, Mikko, Lan, Yueheng, and Corander, Jukka
Abstract:: Motivation: Estimation of bacterial community composition from high-throughput sequenced 16S rRNA gene amplicons is a key task in microbial ecology. Since the sequence data from each sample typically consist of a large number of reads and are adversely impacted by different levels of biological and technical noise, accurate analysis of...
Resource Type:: Article
Full Text:: complexity. PLOS ONE | DOI:10.1371/journal.pone.0140644 October 23, 2015 1 / 16 a11111 OPEN ACCESS

Identification of Genetic Variation between Obligate Plant Pathogens Pseudoperonospora cubensis and P-humuli Using RNA Sequencing and Genotyping-By-Sequencing

Creator:: Summers, Carly F., Gulliford, Colwyn M., Carlson, Craig H., Lillis, Jacquelyn A., Carlson, Maryn O., Cadle-Davidson, Lance, Gent, David H., and Smart, Christine D.
Abstract:: RNA sequencing (RNA-seq) and genotyping-by-sequencing (GBS) were used for single nucleotide polymorphism (SNP) identification from two economically important obligate plant pathogens, Pseudoperonospora cubensis and P. humuli. Twenty isolates of P. cubensis and 19 isolates of P. humuli were genotyped using RNA-seq and GBS. Principle components analysis (PCA) of each data...
Resource Type:: Article
Full Text:: /journal.pone.0143665 November 23, 2015 1 / 19 OPEN ACCESS Citation: Summers CF, Gulliford CM, Carlson CH

Communicating Without the Face: Holistic Perception of Emotions of People With Facial Paralysis

Creator:: Tickle-Degnen, L., Ambady, N., and Bogart, Kathleen R.
Abstract:: People with facial paralysis (FP) report social difficulties, but some attempt to compensate by increasing expressivity in their bodies and voices. We examined perceivers’ emotion judgments of videos of people with FP to understand how they interpret the combination of an inexpressive face with an expressive body and voice. Results...
Resource Type:: Article
Full Text:: IN FACIAL PARALYSIS 2 Abstract People with facial paralysis (FP) report social difficulties, but

Experts' understanding of partial derivatives using the partial derivative machine

Creator:: Roundy, David, Weber, Eric, Dray, Tevian, Bajracharya, Rabindra R., Dorko, Allison, Smith, Emily M., and Manogue, Corinne A.
Abstract:: [This paper is part of the Focused Collection on Upper Division Physics Courses.] Partial derivatives are used in a variety of different ways within physics. Thermodynamics, in particular, uses partial derivatives in ways that students often find especially confusing. We are at the beginning of a study of the teaching...
Resource Type:: Article
Full Text:: ** Oregon State University, Corvallis, Oregon 97331, USA (Received 29 September 2014; published 23 September

ScholarsArchive@OSU

Preliminary Genomic Characterization of Ten Hardwood Tree Species from Multiplexed Low Coverage Whole Genome Sequencing

Ungulate Browsing Maintains Shrub Diversity in the Absence of Episodic Disturbance in Seasonally-Arid Conifer Forest

Relationship Between Wildfire, Salvage Logging, and Occupancy of Nesting Territories by Northern Spotted Owls

Testing the odontocete acoustic prey debilitation hypothesis: No stunning results

Room temperature multiferroic properties of single-phase (Bi₀.₉La₀.₁)FeO₃-Ba(Fe₀.₅Nb₀.₅)O₃ solid solution ceramics

Genetic Polymorphism of Cytochrome P450 4F2, Vitamin E Level and Histological Response in Adults and Children with Nonalcoholic Fatty Liver Disease Who Participated in PIVENS and TONIC Clinical Trials

ARK: Aggregation of Reads by K-Means for Estimation of Bacterial Community Composition

Identification of Genetic Variation between Obligate Plant Pathogens Pseudoperonospora cubensis and P-humuli Using RNA Sequencing and Genotyping-By-Sequencing

Communicating Without the Face: Holistic Perception of Emotions of People With Facial Paralysis

Experts' understanding of partial derivatives using the partial derivative machine

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