Index Catalog // ScholarsArchive@OSU

Unproductive alternative splicing and nonsense mRNAs: A widespread phenomenon among plant circadian clock genes

Creator:: Filichkin, Sergei A. and Mockler, Todd C.
Abstract:: Background: Recent mapping of eukaryotic transcriptomes and spliceomes using massively parallel RNA sequencing (RNA-seq) has revealed that the extent of alternative splicing has been considerably underestimated. Evidence also suggests that many pre-mRNAs undergo unproductive alternative splicing resulting in incorporation of in-frame premature termination codons (PTCs). The destinies and potential functions...
Resource Type:: Article
Full Text:: splicing and nonsense mRNAs: A widespread phenomenon among plant circadian clock genes Sergei A Filichkin1

Improved DNase‑seq protocol facilitates high resolution mapping of DNase I hypersensitive sites in roots in Arabidopsis thaliana

Creator:: Cumbie, Jason S., Filichkin, Sergei A., and Megraw, Molly
Abstract:: Background: Identifying cis-regulatory elements is critical in understanding the direct and indirect regulatory mechanisms of gene expression. Current approaches include DNase-seq, a technique that combines sensitivity to the nonspecific endonuclease DNase I with high throughput sequencing to identify regions of regulatory DNA on a genome-wide scale. While this method was...
Resource Type:: Article
Full Text:: *Correspondence: megrawm@science.oregonstate.edu †Jason S. Cumbie and Sergei A. Filichkin have contributed

JaiswalPankajBotanyPlantPathologyGlobalProfilingRice.pdf

Creator:: Filichkin, Sergei A., Breton, Ghislain, Priest, Henry D., Dharmawardhana, Palitha, Jaiswal, Pankaj, Fox, Samuel E., Michael, Todd P., Chory, Joanne, Kay, Steve A., and Mockler, Todd C.
Abstract:: BACKGROUND: Circadian clocks provide an adaptive advantage through anticipation of daily and seasonal environmental changes. In plants, the central clock oscillator is regulated by several interlocking feedback loops. It was shown that a substantial proportion of the Arabidopsis genome cycles with phases of peak expression covering the entire day. Synchronized...
Full Text:: and cis-Regulatory Modules Sergei A. Filichkin1, Ghislain Breton2¤a, Henry D. Priest1, Palitha

JaiswalPankajBotanyPlantPathologyGlobalProfilingRice_SupportingInformation.zip

Creator:: Filichkin, Sergei A., Breton, Ghislain, Priest, Henry D., Dharmawardhana, Palitha, Jaiswal, Pankaj, Fox, Samuel E., Michael, Todd P., Chory, Joanne, Kay, Steve A., and Mockler, Todd C.
Abstract:: BACKGROUND: Circadian clocks provide an adaptive advantage through anticipation of daily and seasonal environmental changes. In plants, the central clock oscillator is regulated by several interlocking feedback loops. It was shown that a substantial proportion of the Arabidopsis genome cycles with phases of peak expression covering the entire day. Synchronized...

Global Profiling of Rice and Poplar Transcriptomes Highlights Key Conserved Circadian-Controlled Pathways and cis-Regulatory Modules

Creator:: Filichkin, Sergei A., Breton, Ghislain, Priest, Henry D., Dharmawardhana, Palitha, Jaiswal, Pankaj, Fox, Samuel E., Michael, Todd P., Chory, Joanne, Kay, Steve A., and Mockler, Todd C.
Abstract:: BACKGROUND: Circadian clocks provide an adaptive advantage through anticipation of daily and seasonal environmental changes. In plants, the central clock oscillator is regulated by several interlocking feedback loops. It was shown that a substantial proportion of the Arabidopsis genome cycles with phases of peak expression covering the entire day. Synchronized...
Resource Type:: Article

Multiple mantle plume components involved in the petrogenesis of subduction-related lavas from the northern termination of the Tonga Arc and northern Lau Basin: Evidence from the geochemistry of arc and backarc submarine volcanics

Creator:: Falloon, Trevor J., Danyushevsky, Leonid V., Crawford, Tony J., Maas, Roland, Woodhead, Jon D., Eggins, Stephen M., Bloomer, Sherman H., Wright, Dawn J., Zlobin, Sergei K., and Stacey, Andrew R.
Abstract:: New seafloor mapping and sampling demonstrates that the eruption of the high-Ca boninites is clearly associated with rifting of the northern Tonga ridge and the northern Lau Basin at the northern termination of the Tonga Trench. There is very strong evidence for OIB plume related mantle sources involved in the...
Resource Type:: Article
Full Text:: @dusk.geo.orst.edu) Sergei K. Zlobin Vernadsky Institute of Geochemistry and Analytical Chemistry, Russian

Novel nanocomposite synthesis for high-performance thermoelectrics

Creator:: Eilertsen, James S.
Abstract:: Thermoelectric materials are playing a larger role in the global effort to develop diverse, efficient, and sustainable energy technologies: primarily through power-generating thermoelectric modules. The principal components of thermoelectric modules are solid-state thermoelectric materials – typically heavily doped semiconductors – that convert heat directly into electricity. However, this conversion efficiency...
Resource Type:: Dissertation
Full Text:: James Eilertsena, Jun Lia, Sergei Rouvimovb, M. A. Subramaniana aDepartment of Chemistry, Oregon

Towards Resolving Functional and Evolutionary Mysteries of the Large and Heterozygous Genome of Hop (Humulus lupulus) and the Cannabaceae Family Using Genomic Data Science

Creator:: Padgitt-Cobb, Lillian K.
Abstract:: Hop (Humulus lupulus L. var. lupulus) is a diploid, dioecious plant with an extensive history of cultivation and use in brewing, as a textile, and for its therapeutic properties. Hop is prized for its ability to produce a variety of aromatic and flavor compounds, as well as compounds with anti-microbial...
Resource Type:: Dissertation
Full Text:: : David A. Hendrix Hop (Humulus lupulus L. var. lupulus) is a diploid, dioecious plant with an exten

Gene flow from transgenic glyphosate-resistant creeping bentgrass (Agrostis stolonifera L.) at the landscape level

Creator:: Zapiola, Maria Luz
Abstract:: Creeping bentgrass (Agrostis stolonifera L.) is an outcrossing, small- seeded, perennial grass that can establish outside of cultivation and has several compatible relatives. Glyphosate is a nonselective, broad spectrum, herbicide. Transgenic glyphosate-resistant (GR) creeping bentgrass (GRCB) was developed by The Scotts Company and Monsanto, but is still under USDA-APHIS regulated...
Resource Type:: Dissertation
Full Text:: : A case study AN ABSTRACT OF THE DISSERTATION OF Maria Luz Zapiola for the degree of Doctor

Eastern filbert blight in hazelnut (Corylus avellana): identification of new resistance sources and high resolution genetic and physical mapping of a resistance gene

Creator:: Sathuvalli, Vidyasagar R.
Abstract:: European hazelnut, Corylus avellana L., is the only economically important nut crop in the family Betulaceae. One of the threats to the hazelnut industry in the Pacific Northwest is the fungal disease eastern filbert blight (EFB) caused by the pyrenomycete Anisogramma anomala. Host genetic resistance to EFB identified in the...
Resource Type:: Dissertation
Full Text:: High Resolution Genetic and Physical Mapping of a Resistance Gene Abstract approved

ScholarsArchive@OSU

Unproductive alternative splicing and nonsense mRNAs: A widespread phenomenon among plant circadian clock genes

Improved DNase‑seq protocol facilitates high resolution mapping of DNase I hypersensitive sites in roots in Arabidopsis thaliana

JaiswalPankajBotanyPlantPathologyGlobalProfilingRice.pdf

JaiswalPankajBotanyPlantPathologyGlobalProfilingRice_SupportingInformation.zip

Global Profiling of Rice and Poplar Transcriptomes Highlights Key Conserved Circadian-Controlled Pathways and cis-Regulatory Modules

Multiple mantle plume components involved in the petrogenesis of subduction-related lavas from the northern termination of the Tonga Arc and northern Lau Basin: Evidence from the geochemistry of arc and backarc submarine volcanics

Novel nanocomposite synthesis for high-performance thermoelectrics

Towards Resolving Functional and Evolutionary Mysteries of the Large and Heterozygous Genome of Hop (Humulus lupulus) and the Cannabaceae Family Using Genomic Data Science

Gene flow from transgenic glyphosate-resistant creeping bentgrass (Agrostis stolonifera L.) at the landscape level

Eastern filbert blight in hazelnut (Corylus avellana): identification of new resistance sources and high resolution genetic and physical mapping of a resistance gene

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