Index Catalog // ScholarsArchive@OSU

Straub ShannonPlantBioMimosoidLegumePlastome.pdf

Creator:: Dugas, Diana V., Hernandez, David, Koenen, Erik J. M., Straub, Shannon, and et al.
Abstract:: The Leguminosae has emerged as a model for studying angiosperm plastome evolution because of its striking diversity of structural rearrangements and sequence variation. However, most of what is known about legume plastomes comes from few genera representing a subset of lineages in subfamily Papilionoideae. We investigate plastome evolution in subfamily...
Full Text:: ., Koenen, E. J., Schwarz, E., Straub, S., Hughes, C. E., ... & Hajrah, N. H. (2015). Mimosoid legume

Straub ShannonPlantBioMimosoidLegumePlastomeSupFigure1.pdf

Creator:: Dugas, Diana V., Hernandez, David, Koenen, Erik J. M., Straub, Shannon, and et al.
Abstract:: The Leguminosae has emerged as a model for studying angiosperm plastome evolution because of its striking diversity of structural rearrangements and sequence variation. However, most of what is known about legume plastomes comes from few genera representing a subset of lineages in subfamily Papilionoideae. We investigate plastome evolution in subfamily...
Full Text:: Koenen, Erika Schwarz, Shannon Straub, Colin E. Hughes, Robert K. Jansen, Madhugiri Nageswara-Rao

WeitemierKevinBotanyPlantPathologyIntragenomicPolymorphisms.pdf

Creator:: Weitemier, Kevin, Straub, Shannon C. K., Fishbein, Mark, and Liston, Aaron
Abstract:: Despite knowledge that concerted evolution of high-copy loci is often imperfect, studies that investigate the extent of intragenomic polymorphisms and comparisons across a large number of species are rarely made. We present a bioinformatic pipeline for characterizing polymorphisms within an individual among copies of a high-copy locus. Results are presented...
Full Text:: , K., Straub, S. C. K., Fishbein, M., & Liston, A. (2015). Intragenomic polymorphisms among high-copy

WeitemierKevinBotanyPlantPathologyIntragenomicPolymorphisms_SupplementalInformation.zip

Creator:: Weitemier, Kevin, Straub, Shannon C. K., Fishbein, Mark, and Liston, Aaron
Abstract:: Despite knowledge that concerted evolution of high-copy loci is often imperfect, studies that investigate the extent of intragenomic polymorphisms and comparisons across a large number of species are rarely made. We present a bioinformatic pipeline for characterizing polymorphisms within an individual among copies of a high-copy locus. Results are presented...

Intragenomic polymorphisms among high-copy loci: a genus-wide study of nuclear ribosomal DNA in Asclepias (Apocynaceae)

Creator:: Weitemier, Kevin, Straub, Shannon C. K., Fishbein, Mark, and Liston, Aaron
Abstract:: Despite knowledge that concerted evolution of high-copy loci is often imperfect, studies that investigate the extent of intragenomic polymorphisms and comparisons across a large number of species are rarely made. We present a bioinformatic pipeline for characterizing polymorphisms within an individual among copies of a high-copy locus. Results are presented...
Resource Type:: Article

StraubShannonBotanyPlantPathologyHorizontalTransferDNA.pdf

Creator:: Straub, Shannon C. K., Cronn, Richard C., Edwards, Christopher, Fishbein, Mark, and Liston, Aaron
Abstract:: Horizontal gene transfer (HGT) of DNA from the plastid to the nuclear and mitochondrial genomes of higher plants is a common phenomenon; however, plastid genomes (plastomes) are highly conserved and have generally been regarded as impervious to HGT. We sequenced the 158 kb plastome and the 690 kb mitochondrial genome...
Full Text:: (Apocynaceae) Shannon C.K. Straub1,*, Richard C. Cronn2, Christopher Edwards1, Mark Fishbein3, and Aaron

StraubShannonBotanyPlantPathologyHorizontalTransferDNATable_S1.pdf

Creator:: Straub, Shannon C. K., Cronn, Richard C., Edwards, Christopher, Fishbein, Mark, and Liston, Aaron
Abstract:: Horizontal gene transfer (HGT) of DNA from the plastid to the nuclear and mitochondrial genomes of higher plants is a common phenomenon; however, plastid genomes (plastomes) are highly conserved and have generally been regarded as impervious to HGT. We sequenced the 158 kb plastome and the 690 kb mitochondrial genome...

StraubShannonBotanyPlantPathologyHorizontalTransferDNAFigure_S1.pdf

Creator:: Straub, Shannon C. K., Cronn, Richard C., Edwards, Christopher, Fishbein, Mark, and Liston, Aaron
Abstract:: Horizontal gene transfer (HGT) of DNA from the plastid to the nuclear and mitochondrial genomes of higher plants is a common phenomenon; however, plastid genomes (plastomes) are highly conserved and have generally been regarded as impervious to HGT. We sequenced the 158 kb plastome and the 690 kb mitochondrial genome...

Horizontal Transfer of DNA from the Mitochondrial to the Plastid Genome and Its Subsequent Evolution in Milkweeds (Apocynaceae)

Creator:: Straub, Shannon C. K., Cronn, Richard C., Edwards, Christopher, Fishbein, Mark, and Liston, Aaron
Abstract:: Horizontal gene transfer (HGT) of DNA from the plastid to the nuclear and mitochondrial genomes of higher plants is a common phenomenon; however, plastid genomes (plastomes) are highly conserved and have generally been regarded as impervious to HGT. We sequenced the 158 kb plastome and the 690 kb mitochondrial genome...
Resource Type:: Article

Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its application in southern African Oxalis (Oxalidaceae)

Creator:: Schmickl, Roswitha, Liston, Aaron, Zeisek, Vojtěch, Oberlander, Kenneth, Weitemier, Kevin, Straub, Shannon C. K., Cronn, Richard C., Dreyer, Léanne L., and Suda, Jan
Abstract:: Phylogenetics benefits from using a large number of putatively independent nuclear loci and their combination with other sources of information, such as the plastid and mitochondrial genomes. To facilitate the selection of orthologous low‐copy nuclear (LCN) loci for phylogenetics in nonmodel organisms, we created an automated and interactive script to...
Resource Type:: Article
Full Text:: : Schmickl, R. , Liston, A. , Zeisek, V. , Oberlander, K. , Weitemier, K. , Straub, S. C., Cronn, R. C

ScholarsArchive@OSU

Straub ShannonPlantBioMimosoidLegumePlastome.pdf

Straub ShannonPlantBioMimosoidLegumePlastomeSupFigure1.pdf

WeitemierKevinBotanyPlantPathologyIntragenomicPolymorphisms.pdf

WeitemierKevinBotanyPlantPathologyIntragenomicPolymorphisms_SupplementalInformation.zip

Intragenomic polymorphisms among high-copy loci: a genus-wide study of nuclear ribosomal DNA in Asclepias (Apocynaceae)

StraubShannonBotanyPlantPathologyHorizontalTransferDNA.pdf

StraubShannonBotanyPlantPathologyHorizontalTransferDNATable_S1.pdf

StraubShannonBotanyPlantPathologyHorizontalTransferDNAFigure_S1.pdf

Horizontal Transfer of DNA from the Mitochondrial to the Plastid Genome and Its Subsequent Evolution in Milkweeds (Apocynaceae)

Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its application in southern African Oxalis (Oxalidaceae)

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