Index Catalog // ScholarsArchive@OSU

Dataset for predicting the geographic origin of Spanish Cedar (Cedrela odorata L.) based on DNA variation

Creator:: Finch, Kristen N.
Abstract:: The legality of wood products in trade often depends on their geographic origin, creating a need for forensic tools that can verify claims of provenance for wood and wood products. Cedrela odorata L. or Spanish cedar is a target of illegal logging. We developed a 140 SNP Agena™ MassARRAY® assay...
Resource Type:: Dataset

Supplemental data to "A draft genome and transcriptome of common milkweed (Asclepias syriaca) as resources for evolutionary, ecological, and molecular studies in milkweeds and Apocynaceae"

Creator:: Weitemier, Kevin A.
Abstract:: This dataset contains a draft assembly of the common milkweed (Asclepias syriaca) nuclear genome, linkage group information, and gene family counts for Asclepias and related species. The genome assembly is accompanied by annotation of gene models, repeat models, transfer RNAs, and open reading frames, and mapping information of Asclepias transcripts,...
Resource Type:: Dataset

Development of Molecular Markers for Determining Continental Origin of Wood from White Oaks (Quercus L. sect. Quercus)

Creator:: Schroeder, Hilke, Cronn, Richard, Yanbaev, Yulai, Jennings, Tara, Mader, Malte, Degen, Bernd, and Kersten, Birgit
Abstract:: To detect and avoid illegal logging of valuable tree species, identification methods for the origin of timber are necessary. We used next-generation sequencing to identify chloroplast genome regions that differentiate the origin of white oaks from the three continents; Asia, Europe, and North America. By using the chloroplast genome of...
Resource Type:: Article
Full Text:: Schroeder1*, Richard Cronn2, Yulai Yanbaev3, Tara Jennings4, Malte Mader1, Bernd Degen1, Birgit Kersten1 1

Supplemental data to "Casting a broader net: Using microfluidic metagenomics to capture aquatic biodiversity data from diverse taxonomic targets"

Creator:: Hauck, Laura L., Weitemier, Kevin A., Penaluna, Brooke E., Garcia, Tiffany, and Cronn, Richard
Abstract:: This dataset contains the taxonomic classifications of environmental DNA (eDNA) sequences obtained from Fall Creek, Oregon, via microfluidic multiplex PCR (Fluidigm Access Array) and high-throughput sequencing. It is accompanied by electrofishing counts taken at the same time as the eDNA samples. Metadata and R scripts are provided to analyze the...
Resource Type:: Dataset

Preliminary Genomic Characterization of Ten Hardwood Tree Species from Multiplexed Low Coverage Whole Genome Sequencing

Creator:: Staton, Margaret, Best, Teodora, Khodwekar, Sudhir, Owusu, Sandra, Xu, Tao, Xu, Yi, Jennings, Tara, Cronn, Richard, Arumuganathan, A. Kathiravetpilla, Coggeshall, Mark, Gailing, Oliver, Liang, Haiying, Romero-Severson, Jeanne, Schlarbaum, Scott, and Carlson, John E.
Abstract:: Forest health issues are on the rise in the United States, resulting from introduction of alien pests and diseases, coupled with abiotic stresses related to climate change. Increasingly, forest scientists are finding genetic/genomic resources valuable in addressing forest health issues. For a set of ten ecologically and economically important native...
Resource Type:: Article
Full Text:: Jennings5, Richard Cronn5, A. Kathiravetpilla Arumuganathan6, Mark Coggeshall7, Oliver Gailing3, Haiying

Supplemental data to "Estimating the Genetic Diversity of Pacific salmon and trout using Multi-gene eDNA Metabarcoding"

Creator:: Weitemier, Kevin A.
Abstract:: This dataset contains DNA sequence data of Oncorhynchus species, isolated from environmental DNA (eDNA) from Pacific Northwest streams via microfluidic eDNA metabarcoding and high-throughput (Ilummina) sequencing (samples collected from 2017-09-22 to 2017-10-10). It is accompanied by scripts and commands for data analyses including: sequence denoising, calculation of entropy values by...
Resource Type:: Dataset

Re-coding of the Dataset for Status of the European Green Crab, Carcinus maenas, in Oregon and Washington coastal Estuaries in 2019 and 2020

Creator:: Sims, Kimberly, Behrens Yamada, Sylvia, Schooler, Shon, Heller, Renee, Donaldson, Luke, Takacs, Graham T., Randall, Andrea, and Buffington, Chelsey
Abstract:: European green crab, Carcinus maenas, trapped and collected in coastal Oregon and Washington coastal estuaries during the 2019. Data for individual crabs include: estuary, site, date of collection, sex, carapace width, weight, molt stage (color of abdomen), missing limbs, estimated year class, method of collection, and name of collector. This...
Resource Type:: Dataset

Effect of Climate on the Distribution of Fusarium spp. Causing Crown Rot of Wheat in the Pacific Northwest of the United States

Creator:: Poole, Grant J., Smiley, Richard W., Walker, Carl, Huggins, David, Rupp, Richard, Abatzoglou, John T., Garland-Campbell, Kimberly, and Paulitz, Timothy C.
Abstract:: Fusarium crown rot (FCR) is one of the most widespread root and crown diseases of wheat in the Pacific Northwest (PNW) of the United States. Our objectives were to characterize crown rot severity and distribution throughout the PNW by conducting a survey of 210 fields covering the diverse dryland wheat-producing...
Resource Type:: Article
Full Text:: United States Grant J. Poole, Richard W. Smiley, Carl Walker, David Huggins, Richard Rupp, John

Relationship Between Climatic Factors and Distribution of Pratylenchus spp. in the Dryland Wheat-Production Areas of Eastern Washington

Creator:: Kandel, Shyam L., Smiley, Richard W., Garland-Campbell, Kimberly, Elling, Axel A., Abatzoglou, John T., Huggins, David, Rupp, Richard, and Paulitz, Timothy C.
Abstract:: Field surveys were conducted by collecting soil samples to estimate nematode densities in soil from winter wheat, spring wheat, spring barley, and spring legumes (lentil, chickpea, and pea) fields during 2010 and 2011. Pratylenchus spp. were observed in 60% of sampled fields. However, nematodes were detected in nearly all of...
Resource Type:: Article
Full Text:: ; Richard Rupp, Department of Crop and Soil Sciences, Washington State University, Pullman; and Timothy C

Warming Ocean Conditions Relate to Increased Trophic Requirements of Threatened and Endangered Salmon

Creator:: Daly, Elizabeth A. and Brodeur, Richard D.
Abstract:: The trophic habits, size and condition of yearling Chinook salmon (Oncorhynchus tshawytscha) caught early in their marine residence were examined during 19 survey years (1981–1985; 1998–2011). Juvenile salmon consumed distinct highly piscivorous diets in cold and warm ocean regimes with major differences between ocean regimes driven by changes in consumption...
Resource Type:: Article
Full Text:: *, Richard D. Brodeur2 1 Cooperative Institution for Marine Resources Studies, Oregon State University

ScholarsArchive@OSU

Dataset for predicting the geographic origin of Spanish Cedar (Cedrela odorata L.) based on DNA variation

Supplemental data to "A draft genome and transcriptome of common milkweed (Asclepias syriaca) as resources for evolutionary, ecological, and molecular studies in milkweeds and Apocynaceae"

Development of Molecular Markers for Determining Continental Origin of Wood from White Oaks (Quercus L. sect. Quercus)

Supplemental data to "Casting a broader net: Using microfluidic metagenomics to capture aquatic biodiversity data from diverse taxonomic targets"

Preliminary Genomic Characterization of Ten Hardwood Tree Species from Multiplexed Low Coverage Whole Genome Sequencing

Supplemental data to "Estimating the Genetic Diversity of Pacific salmon and trout using Multi-gene eDNA Metabarcoding"

Re-coding of the Dataset for Status of the European Green Crab, Carcinus maenas, in Oregon and Washington coastal Estuaries in 2019 and 2020

Effect of Climate on the Distribution of Fusarium spp. Causing Crown Rot of Wheat in the Pacific Northwest of the United States

Relationship Between Climatic Factors and Distribution of Pratylenchus spp. in the Dryland Wheat-Production Areas of Eastern Washington

Warming Ocean Conditions Relate to Increased Trophic Requirements of Threatened and Endangered Salmon

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