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Filtering by: Creator Solmie, Derek K. Remove constraint Creator: Solmie, Derek K. Subject Bioinformatics Remove constraint Subject: Bioinformatics

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  • Genome Organization in the Ectomycorrhizal Truffle Rhizopogon vesiculosus

    Creator:
    Lu, Dabao Sun
    Abstract:
    Rhizopogon vesiculosus is a common ectomycorrhizal (EM) symbiont of Pseudotusga menziesii (Douglas-fir) in the coast range of the Pacific Northwest. The species has been studied for its systematics, genet size, population structure, and competitive ability in several field and experimental studies. This thesis seeks to provide a more thorough characterization...
    Resource Type:
    Masters Thesis
    Full Text:
    Derek Johnson for significantly reducing the shock factor in my introduction to the world of

  • Algorithms for massive biological datasets

    Creator:
    Bryant, Douglas W. (Douglas Wesley)
    Abstract:
    Within the past several years the technology of high-throughput sequencing has transformed the study of biology by offering unprecedented access to life's fundamental building block, DNA. With this transformation's potential a host of brand-new challenges have emerged, many of which lend themselves to being solved through computational methods. From de...
    Resource Type:
    Dissertation
    Full Text:
    ). . . . . . . . . . . . . . . . . . . . . . . . . . . . 3 1.2 A pair of aligned reads represented by a K-mer graph with a K of size 4. (1.) Two reads share

  • Computational Approaches for Understanding Combinatorial Gene Regulation

    Creator:
    Ansariola, Mitra
    Abstract:
    Gene regulation is a complex mechanism that controls the spatial and temporal expression of genes in a living cell. My dissertation studies focus on two problems. First, tissue-specific gene expression prediction from DNA sequence and chromatin state, and second, the accurate discovery of small over-represented regulatory circuits in gene regulatory...
    Resource Type:
    Dissertation